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chore: patch project maps after tool-config mount cleanup

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2026-06-13 11:40:03 +00:00
parent 5409ba2b13
commit 19291d6be9
15 changed files with 95 additions and 22 deletions
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apps/.pi-map.index.md
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dir: apps
## role
Contains the main deployable application entry points and executable components of the project.
This directory serves as the container for individual application modules or deployable units within the project.
## parent
index: ./.pi-map.index.md
map: ./.pi-map.md
apps/.pi-map.md
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index: apps/.pi-map.index.md
## role
Contains the main deployable application entry points and executable components of the project.
This directory serves as the container for individual application modules or deployable units within the project.
## files
## arch
Typically follows a multi-app monorepo structure where each subdirectory is an independent application sharing common libraries/modules.
Monorepo or multi-package workspace pattern where each subdirectory represents a distinct, independently deployable application sharing common infrastructure or libraries.
## tags
-
## symbols
apps/api/.pi-map.index.md
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dir: apps/api
## role
Self-hosted FastAPI backend API that manages projects, git repositories, and development tools through Docker container orchestration.
Self-hosted FastAPI backend API that manages projects, git repositories, and development tools via Docker instances.
## parent
index: apps/.pi-map.index.md
map: apps/.pi-map.md
apps/api/.pi-map.md
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index: apps/api/.pi-map.index.md
## role
Self-hosted FastAPI backend API that manages projects, git repositories, and development tools through Docker container orchestration.
Self-hosted FastAPI backend API that manages projects, git repositories, and development tools via Docker instances.
## files
- .dockerignore | Specifies files and directories to exclude from Docker build context to reduce image size and avoid copying unnecessary files into containers. | dep: Docker
- Dockerfile | Multi-stage Docker build for a Python application with Docker socket access, Cloudflare tunneling, and database dependency waiting | dep: python:3.11-slim, gcc, libpq-dev, docker-ce-cli, docker-compose-plugin, cloudflared, uvicorn, pyproject.toml dependencies
@@ -14,7 +14,7 @@ Self-hosted FastAPI backend API that manages projects, git repositories, and dev
- uv.lock | Lock file for the uv Python package manager that pins exact dependency versions and their artifact hashes for reproducible installations | dep: uv, Python 3.11+, aiosqlite, alembic, annotated-doc, annotated-types, anyio, ast-serialize, asyncpg, and many other PyPI packages
- wait-for-db.sh | Wait for a PostgreSQL database to become available before executing a command, with configurable retry logic. | dep: nc (netcat), sh (POSIX shell), sleep
## arch
Async Python backend using FastAPI with PostgreSQL (asyncpg), Alembic migrations, multi-stage Docker deployment with Cloudflare tunneling, uv package management, and containerized service coordination with database dependency waiting.
Async Python/FastAPI with PostgreSQL (Alembic migrations), multi-stage Docker containerization with socket access, uv package management, and Cloudflare tunneling integration.
## tags
docker, alembic, python, database, fastapi, postgresql, asyncpg, uvicorn
## symbols
apps/api/alembic/.pi-map.index.md
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dir: apps/api/alembic
## role
Database migration infrastructure for managing schema evolution with async SQLAlchemy support.
Database migration infrastructure for the API application, providing version-controlled schema evolution with async SQLAlchemy support.
## parent
index: apps/api/.pi-map.index.md
map: apps/api/.pi-map.md
apps/api/alembic/.pi-map.md
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index: apps/api/alembic/.pi-map.index.md
## role
Database migration infrastructure for managing schema evolution with async SQLAlchemy support.
Database migration infrastructure for the API application, providing version-controlled schema evolution with async SQLAlchemy support.
## files
- env.py | Configures Alembic database migration environment with async SQLAlchemy support for a project. | exp: func:run_migrations_offline() → None, call:context.configure, call:context.begin_transaction, call:context.run_migrations, func:do_run_migrations(connection: Connection) → None, call:context.configure, call:context.begin_transaction, call:context.run_migrations, func:run_async_migrations() → None, call:async_engine_from_config, call:config.get_section, call:connectable.connect, call:connection.run_sync, call:connectable.dispose, func:run_migrations_online() → None, call:asyncio.run, call:run_async_migrations | dep: logging.config, alembic, sqlalchemy, sqlalchemy.engine, sqlalchemy.ext.asyncio, src.config, src.models, asyncio
- script.py.mako | Alembic database migration script template that generates upgrade/downgrade functions for SQLAlchemy schema migrations | dep: alembic, sqlalchemy
## arch
Alembic migration framework with async SQLAlchemy engine configuration and templated revision scripts.
Alembic migration framework with Mako templating for generating revision scripts, async SQLAlchemy engine configuration, and autogenerate capabilities for schema change tracking.
## tags
migrations, run, sqlalchemy, async, alembic, call:context.configure, call:context.begin, transaction
## symbols
apps/api/alembic/versions/.pi-map.index.md
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dir: apps/api/alembic/versions
## role
Database schema versioning and incremental migration management for the API application's relational database, tracking evolutionary changes to tables, columns, relationships, and data transformations across the project lifecycle.
Manages incremental database schema evolution for the API application using Alembic migrations, tracking all table creations, column additions, relationship changes, and data transformations over the project's lifecycle.
## parent
index: apps/api/alembic/.pi-map.index.md
map: apps/api/alembic/.pi-map.md
@@ -47,9 +47,11 @@ map: apps/api/alembic/.pi-map.md
- 2026_05_29_remove_lsio_command_override.py
- 2026_05_29_remove_ssh_keys_mount_from_manifest.py
- 2026_06_01_add_workspaces.py
- 2026_06_13_make_clone_mode_nullable.py
- 398082499c30_add_tool_config_fields.py
- 6fc7bfcf199f_merge_remove_is_builtin_and_add_config_.py
- 86cec91fdb00_merge_profile_resolver_and_workspaces_.py
- 8c6d1dbd4798_remove_pi_config_and_state_mounts_from_.py
- 8ed7dd80973d_create_config_folders_table.py
- af8512103d67_add_tool_type_fields.py
- f3d2dc90ba3a_merge_single_interface_and_clone_mode.py
apps/api/alembic/versions/.pi-map.md
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@@ -4,7 +4,7 @@ dir: apps/api/alembic/versions
index: apps/api/alembic/versions/.pi-map.index.md
## role
Database schema versioning and incremental migration management for the API application's relational database, tracking evolutionary changes to tables, columns, relationships, and data transformations across the project lifecycle.
Manages incremental database schema evolution for the API application using Alembic migrations, tracking all table creations, column additions, relationship changes, and data transformations over the project's lifecycle.
## files
- 0001_initial_schema.py | Defines the initial database schema migration creating five tables (users, ssh_keys, projects, git_repositories, user_configs) with relationships, indexes, and constraints using Alembic. | exp: func:upgrade() → None, call:op.create_table, call:sa.Column, call:sa.String, call:postgresql.UUID, call:sa.DateTime, call:sa.func.now, call:sa.PrimaryKeyConstraint, call:sa.UniqueConstraint, call:op.create_index, call:op.f, call:sa.Text, call:sa.ForeignKeyConstraint, call:sa.Boolean, call:postgresql.JSONB, func:downgrade() → None, call:op.drop_table, call:op.drop_index, call:op.f | dep: alembic, sqlalchemy.dialects, sqlalchemy, postgresql dialect
- 0002_refresh_tokens.py | Alembic database migration that creates a refresh_tokens table with indexes for user authentication token management | exp: func:upgrade() → None, call:op.get_bind, call:sa.inspect, call:inspector.has_table, call:op.create_table, call:sa.Column, call:postgresql.UUID, call:sa.String, call:sa.DateTime, call:sa.ForeignKeyConstraint, call:sa.PrimaryKeyConstraint, call:sa.UniqueConstraint, call:inspector.get_indexes, call:op.f, call:op.create_index, func:downgrade() → None, call:op.get_bind, call:sa.inspect, call:inspector.has_table, call:inspector.get_indexes, call:op.f, call:op.drop_index, call:op.drop_table | dep: alembic, sqlalchemy.dialects, sqlalchemy, sqlalchemy.dialects.postgresql
@@ -33,7 +33,7 @@ Database schema versioning and incremental migration management for the API appl
- 2026_05_27_external_repos.py | Alembic database migration that makes project_id nullable in git_repositories table to support external repositories and expands alembic_version version_num column to 64 characters. | exp: func:upgrade() → None, call:op.execute, call:op.alter_column, call:sa.UUID, func:downgrade() → None, call:op.alter_column, call:sa.UUID, call:op.execute | dep: typing, alembic, sqlalchemy
- 2026_05_28_add_monitoring_tables.py | Alembic database migration that creates monitoring tables (instance_events and health_checks) with indexes for tracking tool instance events and health checks | exp: func:upgrade() → None, call:op.create_table, call:sa.Column, call:sa.Uuid, call:sa.String, call:sa.Text, call:sa.JSON, call:sa.DateTime, call:sa.func.now, call:sa.ForeignKeyConstraint, call:sa.PrimaryKeyConstraint, call:op.create_index, call:sa.Boolean, call:sa.Integer, func:downgrade() → None, call:op.drop_index, call:op.drop_table | dep: collections.abc, alembic, sqlalchemy
- 2026_05_28_add_terminal_sessions_table.py | Alembic database migration that creates a terminal_sessions table with tracking columns and foreign key to tool_instances | exp: func:upgrade() → None, call:op.create_table, call:sa.Column, call:sa.UUID, call:sa.String, call:sa.DateTime, call:sa.text, call:sa.ForeignKeyConstraint, call:sa.PrimaryKeyConstraint, call:op.create_index, call:op.f, func:downgrade() → None, call:op.drop_index, call:op.f, call:op.drop_table | dep: collections.abc, alembic, sqlalchemy
- 2026_05_28_add_tool_definition_manifests.py | Alembic database migration that creates a tool_definition_manifests table, adds manifest-related columns to tool_types and tool_instances, and migrates existing pi-agent data from Dockerfile templates to JSON-based manifest definitions | exp: func:upgrade() → None, call:op.get_bind, call:op.create_table, call:sa.Column, call:sa.UUID, call:sa.String, call:sa.Text, call:sa.JSON, call:sa.Boolean, call:sa.TIMESTAMP, call:sa.func.now, call:sa.PrimaryKeyConstraint, call:sa.UniqueConstraint, call:sa.ForeignKeyConstraint, call:sa.CheckConstraint, call:conn.execute, call:sa.text, call:result.fetchone, call:op.add_column, call:op.create_foreign_key, call:op.drop_constraint, call:op.execute, call:json.dumps, call:str, func:downgrade() → None, call:op.get_bind, call:conn.execute, call:sa.text, call:result.fetchone, call:op.drop_column, call:op.drop_constraint, call:op.drop_table | dep: json, uuid, typing, alembic, sqlalchemy
- 2026_05_28_add_tool_definition_manifests.py | Alembic database migration that creates a tool_definition_manifests table, adds manifest-related columns to tool_types and tool_instances, and migrates the pi-agent tool from Dockerfile-based to manifest-based definitions with seed data. | exp: func:upgrade() → None, call:op.get_bind, call:op.create_table, call:sa.Column, call:sa.UUID, call:sa.String, call:sa.Text, call:sa.JSON, call:sa.Boolean, call:sa.TIMESTAMP, call:sa.func.now, call:sa.PrimaryKeyConstraint, call:sa.UniqueConstraint, call:sa.ForeignKeyConstraint, call:sa.CheckConstraint, call:conn.execute, call:sa.text, call:result.fetchone, call:op.add_column, call:op.create_foreign_key, call:op.drop_constraint, call:op.execute, call:json.dumps, call:str, func:downgrade() → None, call:op.get_bind, call:conn.execute, call:sa.text, call:result.fetchone, call:op.drop_column, call:op.drop_constraint, call:op.drop_table | dep: json, uuid, typing, alembic, sqlalchemy
- 2026_05_28_drop_tool_configs_and_config_folders.py | Alembic database migration that drops `tool_configs` and `config_folders` tables with conditional existence checks and full downgrade recreation | exp: func:upgrade() → None, call:op.get_bind, call:conn.execute, call:sa.text, call:result.fetchone, call:op.drop_table, func:downgrade() → None, call:op.create_table, call:sa.Column, call:sa.UUID, call:sa.String, call:sa.Text, call:sa.JSON, call:sa.Boolean, call:sa.TIMESTAMP, call:sa.func.now, call:sa.PrimaryKeyConstraint, call:sa.Integer | dep: typing, alembic, sqlalchemy
- 2026_05_29_add_notifications_table.py | Alembic database migration that creates a notifications table with user-linked, categorized, severity-graded messages supporting read/dismissed tracking and optimized querying indexes. | exp: func:upgrade() → None, call:op.create_table, call:sa.Column, call:sa.Uuid, call:sa.String, call:sa.Text, call:sa.JSON, call:sa.DateTime, call:sa.func.now, call:sa.ForeignKeyConstraint, call:sa.PrimaryKeyConstraint, call:op.create_index, call:sa.text, func:downgrade() → None, call:op.drop_index, call:op.drop_table | dep: collections.abc, alembic, sqlalchemy
- 2026_05_29_add_ssh_key_ids_to_tool_instances.py | Alembic database migration that adds a JSON column named ssh_key_ids to the tool_instances table | exp: func:upgrade() → None, call:op.add_column, call:sa.Column, call:sa.JSON, func:downgrade() → None, call:op.drop_column | dep: alembic, sqlalchemy
@@ -44,16 +44,18 @@ Database schema versioning and incremental migration management for the API appl
- 2026_05_29_remove_lsio_command_override.py | Alembic database migration that removes broken command overrides containing --bind-addr or --host flags from LinuxServer.io code-server Docker Compose templates in both database tool_types records and on-disk instance compose files. | exp: func:upgrade() → None, call:op.get_bind, call:conn.execute( sa.text(""" SELECT id, compose_template FROM tool_types WHERE name = 'code-server' """) ).fetchall, call:sa.text, call:yaml.safe_load, call:data["services"].values, call:svc.get, call:yaml.dump, call:print, call:conn.execute( sa.text(""" SELECT column_name FROM information_schema.columns WHERE table_name = 'tool_instances' AND column_name = 'compose_path' """) ).fetchone, call:conn.execute( sa.text(""" SELECT id, compose_path FROM tool_instances WHERE compose_path IS NOT NULL """) ).fetchall, call:Path, call:path.exists, call:path.read_text, call:path.write_text, func:downgrade() → None | dep: collections.abc, alembic, yaml, pathlib, sqlalchemy, pathlib.Path, information_schema
- 2026_05_29_remove_ssh_keys_mount_from_manifest.py | Alembic database migration that removes (or restores) the ssh_keys mount from a JSON manifest stored in the tool_definition_manifests table for the pi-agent tool definition. | exp: func:upgrade() → None, call:op.get_bind, call:conn.execute, call:sa.text, call:result.fetchone, call:isinstance, call:json.loads, call:manifest.get, call:len, call:m.get, call:json.dumps, func:downgrade() → None, call:op.get_bind, call:conn.execute, call:sa.text, call:result.fetchone, call:isinstance, call:json.loads, call:manifest.get, call:any, call:m.get, call:mounts.append, call:json.dumps | dep: json, typing, alembic, sqlalchemy
- 2026_06_01_add_workspaces.py | Alembic database migration that creates a workspaces table with foreign keys to git_repositories and users, adds indexes, and adds a workspace_id column to tool_instances | exp: func:upgrade() → None, call:op.create_table, call:sa.Column, call:sa.Uuid, call:sa.String, call:sa.ForeignKey, call:sa.DateTime, call:sa.text, call:sa.UniqueConstraint, call:op.create_index, call:op.add_column, func:downgrade() → None, call:op.drop_index, call:op.drop_column, call:op.drop_table | dep: collections.abc, alembic, sqlalchemy
- 2026_06_13_make_clone_mode_nullable.py | Alembic database migration that makes the `clone_mode` column in `tool_instances` table nullable to allow NULL values for new rows | exp: func:upgrade() → None, call:op.alter_column, call:sa.String, func:downgrade() → None, call:op.alter_column, call:sa.String | dep: alembic, sqlalchemy
- 398082499c30_add_tool_config_fields.py | Alembic database migration that adds five new columns (port_override, start_command, working_directory, environment_variables, volumes) to the tool_configs table with a port range check constraint. | exp: func:upgrade() → None, call:op.add_column, call:sa.Column, call:sa.Integer, call:sa.Text, call:postgresql.JSONB, call:op.create_check_constraint, call:sa.text, func:downgrade() → None, call:op.drop_constraint, call:op.drop_column | dep: alembic, sqlalchemy.dialects, sqlalchemy, sqlalchemy.dialects.postgresql
- 6fc7bfcf199f_merge_remove_is_builtin_and_add_config_.py | Alembic database migration that merges two parallel revision branches (removing is_builtin and adding config_profiles) into a single history line | exp: func:upgrade() → None, func:downgrade() → None | dep: alembic
- 86cec91fdb00_merge_profile_resolver_and_workspaces_.py | Alembic database migration that merges two divergent migration branches (profile resolver and workspaces) into a single head | exp: func:upgrade() → None, func:downgrade() → None | dep: alembic
- 8c6d1dbd4798_remove_pi_config_and_state_mounts_from_.py | Alembic database migration that removes pi_state and pi_config mounts from the pi-agent manifest in upgrade, and restores them in downgrade | exp: func:_load_manifest(manifest_json), call:isinstance, call:json.loads, func:upgrade() → None, call:op.get_bind, call:conn.execute, call:sa.text, call:result.fetchone, call:_load_manifest, call:manifest.get, call:len, call:m.get, call:json.dumps, func:downgrade() → None, call:op.get_bind, call:conn.execute, call:sa.text, call:result.fetchone, call:_load_manifest, call:manifest.get, call:m.get, call:mounts.append, call:json.dumps | dep: json, alembic, sqlalchemy
- 8ed7dd80973d_create_config_folders_table.py | Alembic database migration that creates a config_folders table with user-owned configuration folders supporting JSONB file storage and project overrides | exp: func:upgrade() → None, call:op.create_table, call:sa.Column, call:postgresql.UUID, call:sa.text, call:sa.ForeignKey, call:sa.String, call:sa.Text, call:postgresql.JSONB, call:sa.Boolean, call:sa.DateTime, call:sa.UniqueConstraint, call:op.create_index, func:downgrade() → None, call:op.drop_index, call:op.drop_table | dep: alembic, sqlalchemy.dialects, sqlalchemy, sqlalchemy.dialects.postgresql
- af8512103d67_add_tool_type_fields.py | Alembic database migration that adds new columns (definition_type, dockerfile_template, build_context, readiness_probe) to the tool_types table with a CHECK constraint on definition_type. | exp: func:upgrade() → None, call:op.add_column, call:sa.Column, call:sa.String, call:sa.Text, call:postgresql.JSONB, call:op.create_check_constraint, call:sa.text, func:downgrade() → None, call:op.drop_constraint, call:op.drop_column | dep: alembic, sqlalchemy.dialects, sqlalchemy, sqlalchemy.dialects.postgresql
- f3d2dc90ba3a_merge_single_interface_and_clone_mode.py | Alembic database migration that merges two prior revisions (single_interface and clone_mode) into a single migration path | exp: func:upgrade() → None, func:downgrade() → None | dep: typing, alembic
## arch
Linear and branched migration history using Alembic (SQLAlchemy's migration tool) with sequential numeric revisions, merge heads to reconcile divergent branches, idempotent data migrations, dialect-specific SQL (PostgreSQL/SQLite), JSON/JSONB columns for flexible schemas, and defensive checks for conditional schema changes; follows additive-only evolution with occasional table drops and column restructures, embedding both schema and data migration logic in revision files.
Linear and branched migration pattern using Alembic's revision system with merge migrations to reconcile divergent branches; each migration is an imperative upgrade/downgrade script containing raw SQL/DDL operations, with some migrations including data seeding and dialect-specific logic (PostgreSQL/SQLite), but lacks consistent naming convention (mixed timestamp and numeric prefixes) indicating organic evolution rather than planned schema design.
## tags
column, table, call:op.drop, key, alembic, downgrade, upgrade, constraint
column, table, call:op.drop, downgrade, alembic, upgrade, key, call:sa.text
## symbols
- upgrade
- downgrade
apps/api/src/.pi-map.index.md
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dir: apps/api/src
## role
Core application package for the Headquarter API, handling configuration, database connectivity, structured logging, and FastAPI application initialization.
Core application package for the Headquarter API, providing configuration, database connectivity, structured logging, and FastAPI application initialization.
## parent
index: apps/api/.pi-map.index.md
map: apps/api/.pi-map.md
apps/api/src/seeds/.pi-map.index.md
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dir: apps/api/src/seeds
## role
Database seeding utilities for populating initial data, specifically built-in tool types.
Provides database seeding utilities for initializing built-in tool type configurations in the API application.
## parent
index: apps/api/src/.pi-map.index.md
map: apps/api/src/.pi-map.md
apps/api/src/seeds/.pi-map.md
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index: apps/api/src/seeds/.pi-map.index.md
## role
Database seeding utilities for populating initial data, specifically built-in tool types.
Provides database seeding utilities for initializing built-in tool type configurations in the API application.
## files
- __init__.py | Marks the directory as a Python package for database seeding utilities.
- builtin_tool_types.py | Seeds built-in Docker Compose-based tool types (VS Code Server, Jupyter Notebook, OpenCode) into a database with idempotent create-or-update logic. | exp: func:_table_exists(session, table_name: str) → bool, call:session.execute, call:text, call:result.scalar, func:seed_builtin_tool_types(), call:SessionLocal, call:_table_exists, call:logger.warning, call:session.scalar, call:select(ToolType).where, call:ToolType, call:tool_data.get, call:session.add, call:logger.info, call:session.commit | dep: logging, sqlalchemy, src.database, src.models
- builtin_tool_types.py | Seeds built-in tool types (code-server, jupyter-notebook, opencode) into a database with upsert logic, creating or updating Docker Compose-based development environment templates. | exp: func:_table_exists(session, table_name: str) → bool, call:session.execute, call:text, call:result.scalar, func:seed_builtin_tool_types(), call:SessionLocal, call:_table_exists, call:logger.warning, call:session.scalar, call:select(ToolType).where, call:ToolType, call:tool_data.get, call:session.add, call:logger.info, call:session.commit | dep: logging, sqlalchemy, src.database, src.models
## arch
Simple procedural seeding scripts with idempotent create-or-update logic for Docker Compose-based tool definitions.
Simple procedural seeding script using SQLAlchemy upsert operations to populate reference data for containerized development environment templates.
## tags
tool, types, table, exists, builtin, call:tool, database, init
## symbols