fix: mount /data/instances as host bind mount for API
When API runs in Docker with named volume instance_data:/data/instances, generated docker-compose.yml files use bind mounts like /data/instances/.../repo-clone:/workspace. Docker resolves bind mounts on the host filesystem, not in named volumes, so containers see empty directories. By mounting /data/instances as a host bind mount, both the API and generated tool containers access the same host path.
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