Commit Graph

581 Commits

Author SHA1 Message Date
Fusion d4b52668aa fix: align backend commit response with frontend expectations
Backend was returning fields like 'author', 'email', 'date' but frontend
expected 'author_name', 'author_email', 'author_date'. Also 'branches' and
'tags' were separate but frontend expects unified 'refs' array.

- Update _commit_to_dict to return frontend-compatible field names
- Add graph_symbol and graph_depth for commit graph display
- Update get_commit_detail to return matching field names
- Include diff as top-level field for detail view
2026-05-19 13:04:49 +02:00
Fusion d0191cd549 fix: use NULL bytes as git log format separators
The git log --graph output uses | characters in the ASCII art,
which conflicts with using | as a format separator. Switch to
NULL bytes (\x00) which won't appear in commit data.

Also removed --graph flag since we build graph data from
parent relationships instead.
2026-05-19 13:00:22 +02:00
Fusion 0ae0e3fec1 feat: add git history backend implementation
- Add git_history.py utility for extracting commit history and details
- Add API endpoints for repository history and commit details
- Integrate with existing git_repositories router

This completes the backend for git history visualization.
2026-05-19 12:50:57 +02:00
Fusion 0926e4de83 feat: add git history visualization frontend
- Add API client functions for commit history and detail endpoints
- Create GitHistoryPage with commit list, graph visualization, and detail panel
- Add branch selector for viewing different branches
- Integrate history view into repository list with History button
- Add comprehensive CSS styles for history page layout

Quality gates: typecheck ✓, lint ✓, build ✓
2026-05-19 12:44:37 +02:00
Fusion 8b70daed53 feat: smart git URL parsing for browser URLs
- Add git URL parsing utilities (extract_base_repo_url, parse_git_url)
- Support GitHub, GitLab, Bitbucket browser URL detection
- Add /projects/repositories/parse-url endpoint
- Enhance repository creation to detect browser URLs and suggest corrections
- Add real-time URL validation in frontend with debouncing
- Show visual indicators (green/yellow/red) for URL validity
- Display inline suggestions with 'Use Suggested' button
- Add comprehensive unit tests for URL parsing
- Quality gates: ruff ✓, mypy ✓, typecheck ✓, lint ✓, build ✓
2026-05-19 12:25:44 +02:00
Fusion ac6c97b6ce fix: add missing timestamps to ssh_keys model
SSHKey model was missing created_at/updated_at columns which the API
response model expected. Add TimestampMixin and Alembic migration.
2026-05-19 11:51:39 +02:00
Fusion a433c82488 fix: datetime serialization in API response models
Tool types and git repositories response models declared created_at/
updated_at as str but ORM returns datetime objects. Change to datetime
type so Pydantic serializes correctly to ISO format strings.
2026-05-19 11:42:14 +02:00
Fusion f8700fd7ed fix: dashboard endpoint and SSH key Fernet key generation
- Create missing /dashboard/summary endpoint that frontend expects
- Fix SSH key Fernet key generation to use proper base64 encoding
  (was using raw session secret slice which failed validation)
2026-05-19 11:38:25 +02:00
Fusion 0fcfc745ff fix: add alias=session to Cookie dependencies
FastAPI uses parameter name as cookie name by default.
get_current_user_id was looking for 'session_cookie' but we set
the cookie as 'session'. Add alias='session' to match.
2026-05-19 10:56:11 +02:00
Fusion d214ab82db debug: add logging to auth cookie handling
Add debug logging to understand why /auth/me succeeds but
/users/me/config fails with 401.
2026-05-19 10:52:33 +02:00
Fusion 753f1506b6 fix: wrap /auth/me response in user object to match frontend types
Frontend expects {user: {id, email, name, avatar_url}} but backend
was returning flat object. This caused auth state to fail parsing.
2026-05-19 10:43:18 +02:00
Fusion 58bf30ed15 fix: set cookie domain for cross-subdomain authentication
In production, the session cookie needs to be shared across
subdomains (e.g., api.example.com and app.example.com).

- Add cookie_domain property to config (extracts parent domain)
- Set SameSite=None for cross-origin requests in production
- Update auth callback and logout to use cookie domain
- This fixes the login loop where session cookie wasn't sent
2026-05-18 23:33:59 +02:00
Fusion c067c03662 fix: add CORS middleware to allow frontend auth requests
Add CORSMiddleware configured to:
- Allow the frontend origin (web_base_url)
- Allow credentials (cookies)
- Allow all methods and headers

This fixes cross-origin requests between frontend and API
when they're on different subdomains.
2026-05-18 23:27:11 +02:00
Fusion d273535950 fix: redirect to frontend after OAuth callback instead of returning JSON
- /auth/callback now redirects to frontend URL with session cookie
- /auth/login stores 'next' path in cookie for post-login redirect
- User is redirected to their original destination after authentication
2026-05-18 23:22:25 +02:00
Fusion 7f97ba8e9b fix: make migrations idempotent with if_not_exists
Add if_not_exists=True to CREATE TABLE operations in migrations
0003 and 0004. This prevents DuplicateTableError when migrations
are re-run on databases where tables were partially created.
2026-05-18 23:18:11 +02:00
Fusion caf73e39ba fix: use subprocess for alembic migrations to avoid async/sync issues
SQLAlchemy 2.0 async engines conflict with alembic's sync context manager.
Instead of trying to bridge async/sync, use subprocess to run
'alembic upgrade head' directly. This is simpler and more reliable.

- Remove psycopg2-binary dependency (no longer needed)
- Simplify init_database to use subprocess.run()
- Remove all sync engine code
2026-05-18 23:16:01 +02:00
Fusion 1e70462c2b fix: use sync engine for alembic migration operations
SQLAlchemy 2.0 async engines don't support the sync context manager
protocol needed by alembic. Create a separate sync engine (using
psycopg2) for migration operations while keeping async engine for
application queries.

- Add psycopg2-binary dependency
- Rename async connection variable to avoid mypy confusion
- Use sync engine for MigrationContext and alembic commands
2026-05-18 23:09:44 +02:00
Fusion b9684b0107 fix: fail fast on startup if database migrations fail
- Exit with error code 1 if init_database() returns False
- Update health check to verify database connectivity
- Prevents confusing 'table does not exist' errors later
2026-05-18 23:05:30 +02:00
Fusion 2ce7862058 feat: simplify auth flow - replace JWT with session cookies
Replace complex JWT + refresh token authentication with simple
session-based auth using signed cookies.

**Removed:**
- JWT token service (jwt_service.py)
- Refresh token store (refresh_store.py)
- Refresh token model and database table
- JWKS fetching and OIDC token verification
- python-jose dependency

**Added:**
- Session service (session.py) with HMAC-SHA256 signed cookies
- Auth dependencies module for shared auth logic
- Session-based auth endpoints

**Updated:**
- All API endpoints to use session-based auth
- Config: removed JWT settings, added SESSION_SECRET/SESSION_TTL_HOURS
- Tests: rewritten for session-based flow
- Frontend: no changes needed (already uses cookies)

Quality gates: ruff ✓, mypy ✓, typecheck ✓, lint ✓
2026-05-18 22:54:53 +02:00
Fusion 285d3dace8 fix: use await engine.connect() instead of async with
SQLAlchemy 2.0 async engine.connect() doesn't support context manager.
Use explicit connect/close instead.
2026-05-18 22:38:08 +02:00
Fusion 9fefe289a7 fix: prevent concurrent migrations in multi-worker setup
Add migration version check before running alembic upgrade to prevent
multiple uvicorn workers from running migrations simultaneously.

- Check current vs head revision before running migrations
- Skip migration if already at latest version
- Log current and head revision for debugging
2026-05-18 22:35:42 +02:00
Fusion 843683d579 feat: add comprehensive request and error logging
Add logging infrastructure:
- RequestLoggingMiddleware: logs all requests with method, path, status, timing
- ExceptionLoggingMiddleware: catches and logs unhandled exceptions with stack traces
- configure_logging(): structured logging with configurable level via LOG_LEVEL env var

Add detailed auth flow logging:
- Login initiation
- Token exchange success/failure
- JWKS fetch success/failure
- Token verification
- User lookup/creation
- Database errors
- Final response

This enables tracing Internal Server Errors through the logs.
2026-05-18 22:22:56 +02:00
Fusion ea6c466c6c feat: add automatic database initialization and recovery
- Add init_database() with alembic programmatic API and retry logic
- Add connection retry with exponential backoff (5 attempts)
- Improve error messages for connection/auth failures
- Add table existence check before seeding data
- Update startup event to run migrations before seeding
- Add wait-for-db.sh script for Docker containers
- Update Docker and docker-compose configurations

Quality gates: ruff ✓, mypy ✓, unit tests (8 passed)
2026-05-18 22:10:15 +02:00
Fusion 29c3563148 fix: correct down_revision reference in user_configs migration
0003_user_configs was referencing '0002' but 0002_refresh_tokens
has revision ID '0002_refresh_tokens'. Fix the chain.
2026-05-18 21:55:54 +02:00
Fusion 0509b9eb4a fix: separate Authentik application slug from OAuth client ID
Authentik uses different values for:
- OAuth Client ID (UUID for authentication)
- Application Slug (URL-friendly identifier like 'headquarter-web')

Add AUTHENTIK_APPLICATION_SLUG config to build correct Authentik URLs
while keeping AUTHENTIK_CLIENT_ID for OAuth token exchange.
2026-05-18 21:46:54 +02:00
Fusion 137757602f fix: make refresh_token optional in OIDC token exchange
Authentik may not return a refresh_token in the authorization_code
response. Use .get() instead of direct dict access to prevent KeyError.
2026-05-18 21:41:13 +02:00
Fusion 3cd8674c31 fix: add /health endpoint for health checks
Add simple health check endpoint that returns {status: healthy}.
Needed for Traefik health checks and monitoring.
2026-05-18 21:36:39 +02:00
Fusion 899fba9c9b fix: handle missing tool_types table gracefully on startup
Catch ProgrammingError when tool_types table doesn't exist yet
(during fresh database setup). Log warning and skip seeding instead
of crashing.
2026-05-18 21:29:48 +02:00
Fusion 6dbd55a9ac fix: correct uvicorn module path in Dockerfile
main.py is located at src/main.py, not at the root.
Changed CMD from 'main:app' to 'src.main:app' to fix ASGI import error.
2026-05-18 17:53:40 +02:00
Fusion 7b72ccdc3c docs: sync tool-types-definition specs and mark tasks complete
- Mark manual testing tasks as complete in tool-types-definition
- Sync tool-types-definition spec to main specs directory
2026-05-18 17:10:23 +02:00
Fusion 6b302b3279 feat: implement tool types definition system
- Add ToolType SQLAlchemy model with Docker Compose template support
- Create CRUD API endpoints for tool type management
- Implement YAML and template variable validation
- Add built-in tool types (code-server, jupyter-notebook) seeded on startup
- Create frontend page with list, create, edit, and delete functionality
- Add tool types navigation to app shell
- Update mypy config to ignore missing imports

Quality gates: ruff (passed), mypy (passed), pytest unit (8 passed),
typecheck (passed), lint (passed), build (passed)
2026-05-18 16:27:19 +02:00
Fusion 94254ee3fd feat: complete user config management
- Add theme support with dark/light/system modes
- Add useTheme hook for applying user config theme
- Update router to use SettingsPage
- Update app-shell to apply theme on load
- Add CSS variables for dark theme
- Fix mypy errors in user_config.py
- Quality gates pass: ruff, mypy, typecheck, lint, build
2026-05-18 15:58:01 +02:00
Fusion 4e2edb1d93 feat: implement git repository management
- Add backend API for git repository CRUD (create, list, delete)
- Support bare repository initialization and mirror cloning
- Add cascade delete for repositories when project is deleted
- Add frontend page for repository management per project
- Update project page with link to repositories
- Add repo_base_path to config
- Quality gates: ruff, mypy, typecheck, lint, build all pass
2026-05-18 15:47:42 +02:00
Fusion b179319601 fix: resolve failing unit tests after test infrastructure migration
- Update test_config.py: account for conftest.py DATABASE_URL override
- Update test_migration_metadata.py: correct alembic path resolution
  (alembic/ is at project root, not under src/)
2026-05-18 15:27:48 +02:00
Fusion 4299c64922 refactor: remove duplicate fixtures and add SQLite support
Task 2.5: Remove duplicate fixtures from integration tests
- test_auth_api.py, test_auth_services.py, test_models.py
- test_projects_api.py, test_seed.py, test_users_api.py
- Fix npytest typos in all test files

Task 3.2: Update SQLAlchemy configuration for SQLite
- Use generic Uuid type instead of PostgreSQL-specific UUID
- Use generic JSON type instead of PostgreSQL-specific JSONB
- Update database.py to handle SQLite connection args

Unit tests now run without PostgreSQL (5/8 passing)
2026-05-18 15:14:46 +02:00
Fusion 3ccd94f661 feat: restructure test infrastructure with unit/integration/system separation
Test Organization:
- Create tests/unit/, tests/integration/, tests/system/ directories
- Move existing tests into appropriate categories
- Add pytest markers (@pytest.mark.unit, @pytest.mark.integration)

Shared Fixtures:
- Create conftest.py with SQLite engine (for unit tests)
- Add PostgreSQL session fixture with transaction rollback
- Add TestClient fixture for API tests

Configuration:
- Update pyproject.toml with asyncio_mode=auto
- Add test markers and default addopts
- Add aiosqlite dependency for SQLite support

E2E Testing:
- Initialize Playwright in e2e/ directory
- Add playwright.config.ts
- Create login flow E2E test

Build:
- Add test-unit, test-integration, test-system, test-e2e to Makefile
- Update test target to run all categories
- Add testing documentation to README

Note: Some tests have import issues due to missing python-jose
package in dev environment. This needs to be addressed separately.
2026-05-18 15:00:33 +02:00
Fusion a441ea2fac feat: implement SSH key management
- Add backend API endpoints for SSH key CRUD (POST, GET, DELETE)
- Implement Ed25519 key generation with Fernet-encrypted private keys
- Add frontend SSH keys page with generate, list, and delete functionality
- Include copy-to-clipboard for public keys
- Add responsive CSS styles for key cards
- Register ssh_keys router in main.py
- Add basic auth tests for SSH key endpoints

Quality gates: ruff ✓, mypy ✓, typecheck ✓, lint ✓
2026-05-18 14:44:21 +02:00
Fusion be81aa1c8b fix: pass Vite env vars as Docker build args
Vite reads env vars at build time, not runtime. The previous setup
only set them in docker-compose 'environment' which is only available
at container runtime. Now they are passed as build args so Vite can
embed the correct API URL during the build process.

- Add build args to web service in both compose files
- Update Dockerfile to accept ARGs and set ENV for Vite
- Fixes login redirect always going to localhost:8000
2026-05-18 11:09:37 +02:00
Fusion 1daac47951 fix: use full API URL for OAuth login redirects
In Traefik deployment, API and web are on different domains.
Frontend was using relative paths (/auth/login) which resolved
to the web domain instead of the API domain.

- Update LoginRedirectPage to use VITE_API_BASE_URL for login link
- Update apiClient 401 interceptor to redirect to full API URL
- Ensures OAuth flow works correctly with separate domains
2026-05-18 10:56:27 +02:00
Fusion d38f953dfc fix: use 127.0.0.1 in web healthcheck to avoid IPv6 issues
wget resolves 'localhost' to IPv6 [::1] but nginx only listens on
IPv4 0.0.0.0:80, causing connection refused. Using 127.0.0.1 ensures
IPv4 connection and healthy container status.
2026-05-18 10:49:20 +02:00
Fusion fff3ea0c2f fix: resolve nginx pid permission error in web container
- Create /run directory explicitly for nginx.pid
- Set proper ownership and permissions for non-root user
- Fixes 'open() /run/nginx.pid failed (13: Permission denied)' error
2026-05-18 10:36:06 +02:00
Fusion 236130b0a7 fix: use npm install in web Dockerfile to resolve esbuild platform deps
The package-lock.json was missing some esbuild optional dependencies
for other platforms. Using npm install instead of npm ci allows the
docker build to proceed without requiring all platform-specific packages
in the lock file.
2026-05-18 04:30:37 +02:00
Fusion 577b052c05 feat: implement user profile management and oauth/traefik integration
User Profile (US-004):
- Add authenticated profile endpoints (GET/PUT /users/me)
- Add avatar upload with file validation (PNG/JPEG, max 2MB)
- Create frontend profile page with edit form and avatar upload
- Update app shell to link to profile page

OAuth/Traefik Integration:
- Externalize all Authentik URLs to environment variables
- Add domain configuration (API_DOMAIN, WEB_DOMAIN, AUTHENTIK_DOMAIN)
- Create docker-compose.traefik.yml for reverse proxy deployment
- Update OAuth redirect/callback URLs to use configured domains
- Add VITE_APP_URL for frontend public URL configuration

Quality gates: pytest (50 passed), ruff, mypy, npm test (12 passed), typecheck, lint, build
2026-05-17 23:17:10 +02:00
alex 71d9fe6406 feat: implement auth, projects, and frontend foundation 2026-05-17 20:21:55 +00:00
alex e7819bfc82 feat: implement docker infrastructure (US-001)
- Add docker-compose.yml with postgres, redis, api, and web services
- Add multi-stage Dockerfile for API (Python 3.11)
- Add multi-stage Dockerfile for web (Node.js 20 + nginx)
- Add Makefile with common development commands
- Add .env.example with all required environment variables
- Add placeholder pyproject.toml and package.json for builds
- Configure health checks for all services
- Setup persistent volumes for postgres, redis, and repos
- Run services as non-root users
2026-05-16 17:44:39 +00:00
alex 082e8d03ff auth fixes 2026-05-16 14:57:55 +00:00
alex 84038c25ec fix: use correct Authentik authorization and token endpoints
The OIDC issuer URL was being used to construct authorize/token URLs,
but Authentik's endpoints are at different paths than the issuer base.

- Use the actual authorization_endpoint from .well-known config
- Use the actual token_endpoint from .well-known config
- Fixes Authentik 'not found' error on login redirect
2026-05-16 13:46:09 +00:00
alex d23582eb82 fix: normalize OIDC issuer URL to avoid double slashes
CI / API CI (push) Failing after 9s
CI / Web CI (push) Failing after 10s
The OIDC issuer URL in .env ends with a trailing slash, which caused
the authorize endpoint to have a double slash (//authorize).

- Normalize issuer URL by removing trailing slash before appending path
- Applied to both LoginPage.tsx and CallbackPage.tsx
- Fixes Authentik 'not found' error on login redirect
2026-05-16 13:36:50 +00:00
alex 44e2ae60ef fix: add VITE_OIDC_REDIRECT_URI and build args for frontend
- Add VITE_OIDC_REDIRECT_URI to .env.example and docker-compose files
- Pass OIDC variables as build args in Dockerfile (build-time only)
- Update both docker-compose.prod.yml and docker-compose.traefik.yml
- Fixes undefined OIDC variables causing 404 on login redirect
2026-05-16 13:14:09 +00:00
alex ed642dcc66 feat(FN-007): add repository connection frontend UI
- Create RepositoryListPage with connection status display
- Create RepositoryDetailPage with SSH key management
- Add repository API methods to client
- Update router with repository routes
- Add Repository types to frontend
2026-05-16 13:42:08 +02:00