added code

This commit is contained in:
Alex Blank
2025-05-19 11:11:04 +02:00
parent 75db81367c
commit 50cf43b9fe
95 changed files with 7333 additions and 0 deletions
+58
View File
@@ -0,0 +1,58 @@
import math
import torch
from torch import nn
class CNNTransformer(nn.Module):
def __init__(self,
input_dim,
output_dim,
seq_len,
cnn_channels,
kernel_size,
embed_dim,
num_enc_layers,
num_heads):
super().__init__()
self.cnn = nn.Sequential(
nn.Conv1d(input_dim, cnn_channels, kernel_size=kernel_size, padding=1),
nn.BatchNorm1d(cnn_channels),
nn.ReLU(),
nn.Conv1d(cnn_channels, embed_dim, kernel_size=kernel_size, padding=1),
nn.BatchNorm1d(embed_dim),
nn.ReLU()
)
# Compute positional embedding ONCE at init
pe = self._get_sinusoidal_embedding(seq_len, embed_dim) # (seq_len, embed_dim)
self.register_buffer('pos_embed', pe.unsqueeze(0)) # (1, seq_len, embed_dim)
encoder_layer = nn.TransformerEncoderLayer(embed_dim, num_heads)
self.encoder = nn.TransformerEncoder(encoder_layer, num_enc_layers)
self.pool = nn.AdaptiveAvgPool1d(1)
self.head = nn.Linear(embed_dim, output_dim)
def _get_sinusoidal_embedding(self, seq_len, embed_dim):
position = torch.arange(0, seq_len).unsqueeze(1)
div_term = torch.exp(torch.arange(0, embed_dim, 2) * -(math.log(10000.0) / embed_dim))
pe = torch.zeros(seq_len, embed_dim)
pe[:, 0::2] = torch.sin(position * div_term)
pe[:, 1::2] = torch.cos(position * div_term)
return pe # (seq_len, embed_dim)
def forward(self, x):
# x: (batch, seq_len, input_dim)
x = x.permute(0, 2, 1) # (B, input_dim, seq_len)
cnn_out = self.cnn(x) # (B, embed_dim, seq_len)
cnn_out = cnn_out.permute(2, 0, 1) # (S, B, E) for Transformer
# Add positional embedding
pos_embed = self.pos_embed[:, :cnn_out.size(0), :] # (1, seq_len, embed_dim)
pos_embed = pos_embed.transpose(0, 1) # → (seq_len, 1, embed_dim)
cnn_out = cnn_out + pos_embed # broadcast over batch
# Apply Transformer encoder
enc = self.encoder(cnn_out) # (S, B, E)
pooled = enc.mean(0) # (B, E)
return self.head(pooled)
+94
View File
@@ -0,0 +1,94 @@
import numpy as np
import torch
def flat_x_y_collate(batch, *args, **kwargs) -> tuple:
"""
Collate function for a classical model with flat x and y feature vectors
"""
# Flatten each item in the batch
flattened_x = list()
flattened_y = list()
for i in range(len(batch)):
item = batch[i]
flattened_x_item = list()
flattened_y_item = list()
for j, (category, windows) in enumerate(item.items()):
for feature in windows.T:
if category == "target":
flattened_y_item.append(feature)
else:
flattened_x_item.append(feature)
# create numpy arrays with t_1_f1, t_1_f2, t_2_f1, t_2_f2 and so on
reordered_x = np.empty((len(flattened_x_item) * len(flattened_x_item[0])))
reordered_y = np.empty((len(flattened_y_item) * len(flattened_y_item[0])))
for j in range(len(flattened_x_item)):
for k in range(len(flattened_x_item[j])):
reordered_x[j + k * len(flattened_x_item)] = flattened_x_item[j][k]
for j in range(len(flattened_y_item)):
for k in range(len(flattened_y_item[j])):
reordered_y[j + k * len(flattened_y_item)] = flattened_y_item[j][k]
# append to the list
flattened_x.append(reordered_x)
flattened_y.append(reordered_y)
return np.array(flattened_x), np.array(flattened_y)
def simple_x_y_collate(batch):
"""
Collate function for LSTM model
"""
collated_x = list()
collated_y = list()
for item in batch:
current_x = list()
current_y = list()
for category, windows in item.items():
if category == "target_features":
current_y.append(windows)
else:
current_x.append(windows)
collated_x.append(np.concatenate(current_x, axis=1))
collated_y.append(np.concatenate(current_y, axis=1))
return torch.tensor(collated_x, dtype=torch.float32), torch.tensor(collated_y, dtype=torch.float32)
def collate_with_padding(batch,
padding_value: float = 0.0, ):
"""
Collate the batch with padding
"""
# create simple lists for x and y
collated_x = list()
collated_y = list()
for item in batch:
current_x = list()
current_y = list()
for category, windows in item.items():
if category == "target_features":
current_y.append(windows)
else:
current_x.append(windows)
collated_x.append(np.concatenate(current_x, axis=1))
collated_y.append(np.concatenate(current_y, axis=1))
# get the max length of the x and y
max_x_length = max([x.shape[0] for x in collated_x])
max_y_length = max([y.shape[0] for y in collated_y])
# pad the x and y
padded_x = list()
padded_y = list()
for x, y in zip(collated_x, collated_y):
padded_x.append(
np.pad(x, ((max_x_length - x.shape[0], 0), (0, 0)), mode='constant', constant_values=padding_value))
padded_y.append(
np.pad(y, ((max_y_length - y.shape[0], 0), (0, 0)), mode='constant', constant_values=padding_value))
return torch.tensor(padded_x, dtype=torch.float32), torch.tensor(padded_y, dtype=torch.float32)
+46
View File
@@ -0,0 +1,46 @@
from torch import nn
class LSTMModel(nn.Module):
def __init__(self,
input_dim: int,
output_dim: int,
cnn_channels: int,
cnn_kernel_size: int,
embed_dim: int,
lstm_hidden_size=64,
num_layers=1):
super().__init__()
self.cnn = nn.Sequential(
nn.Conv1d(input_dim, cnn_channels, kernel_size=cnn_kernel_size, padding=1),
nn.BatchNorm1d(cnn_channels),
nn.ReLU(),
nn.Conv1d(cnn_channels, embed_dim, kernel_size=cnn_kernel_size, padding=1),
nn.BatchNorm1d(embed_dim),
nn.ReLU()
)
self.lstm = nn.LSTM(
input_size=embed_dim,
hidden_size=lstm_hidden_size,
num_layers=num_layers,
batch_first=True,
)
self.head = nn.Sequential(
nn.Linear(lstm_hidden_size, output_dim) # Output is a scalar Δt
)
def forward(self, x):
# x: (batch_size, seq_len, input_size)
x = x.permute(0, 2, 1)
# x: (batch_size, input_size, seq_len)
x = self.cnn(x)
# x: (batch_size, embed_dim, seq_len)
x = x.permute(0, 2, 1)
# x: (batch_size, seq_len, embed_dim)
x, _ = self.lstm(x)
# x: (batch_size, seq_len, lstm_hidden_size)
x = x[:, -1, :] # Get the last time step
# x: (batch_size, lstm_hidden_size)
x = self.head(x)
# x: (batch_size, output_size)
return x
+155
View File
@@ -0,0 +1,155 @@
import datetime
import os
import torch
from torch import nn
from torch.optim import AdamW
from torch.optim.lr_scheduler import OneCycleLR
from torch.utils.data import IterableDataset, DataLoader
from models.third_party.tft_model import TemporalFusionTransformer
def get_tft_model(model_configuration: dict,
sample_item: dict,
device: str) -> nn.Module:
config_class = create_config_class(model_configuration, sample_item)
model = TemporalFusionTransformer(config_class)
model.to(device)
return model
def create_training_state(model_configuration: dict,
training_configuration: dict,
train_dataset: IterableDataset | DataLoader,
device: str) -> dict:
training_state = dict()
sample_item = next(iter(train_dataset))
if model_configuration["model_type"] == "TemporalFusionTransformer":
training_state["model"] = get_tft_model(model_configuration,
sample_item,
device)
else:
raise NotImplementedError(f"Model type {model_configuration['type']} not implemented")
training_state["optimizer"] = AdamW(training_state["model"].parameters(),
lr=training_configuration["learning_rate"])
training_state["scheduler"] = OneCycleLR(training_state["optimizer"],
max_lr=training_configuration["learning_rate"],
total_steps=len(train_dataset) *
training_configuration[
"epochs"])
training_state["current_epoch"] = 1
return training_state
def get_checkpoints(model_configuration: dict, training_configuration: dict) -> list:
checkpoints_dir = f"{model_configuration['model_dir']}/trainings/{training_configuration['id']}/checkpoints"
if os.path.exists(checkpoints_dir):
checkpoints = [os.path.join(checkpoints_dir, f) for f in os.listdir(checkpoints_dir) if
f.endswith('.pt') and "checkpoint" in f]
checkpoints.sort(key=os.path.getmtime, reverse=False)
return checkpoints
else:
return []
def load_checkpoint(checkpoint_path: str,
training_configuration: dict,
model_configuration: dict,
test_data_loader: IterableDataset | DataLoader,
device: str) -> tuple:
checkpoint = torch.load(checkpoint_path)
training_state = torch.load(checkpoint_path)
sample_item = next(iter(test_data_loader))
# load model
if model_configuration["model_type"] == "TemporalFusionTransformer":
model = get_tft_model(model_configuration,
sample_item,
device)
model_configuration["model"] = model
else:
raise NotImplementedError(f"Model type {model_configuration['model_type']} not implemented")
# load optimizer
optimizer = AdamW(model.parameters(), lr=training_configuration["learning_rate"])
optimizer.load_state_dict(checkpoint["optimizer"])
training_state["optimizer"] = optimizer
# load scheduler
scheduler = OneCycleLR(optimizer,
max_lr=training_configuration["learning_rate"],
total_steps=len(test_data_loader) * training_configuration["epochs"])
scheduler.load_state_dict(checkpoint["scheduler"])
training_state["scheduler"] = scheduler
return training_state
def save_checkpoint(training_config: dict,
training_state: dict,
model_config: dict) -> None:
checkpoints_dir = f"{model_config['model_dir']}/trainings/{training_config['id']}/checkpoints"
checkpoint_id = datetime.datetime.now().strftime("%Y%m%d_%H%M%S")
checkpoint_path = os.path.join(checkpoints_dir, f"checkpoint_{checkpoint_id}.pt")
if not os.path.exists(checkpoints_dir):
os.makedirs(checkpoints_dir)
config_to_save = training_state.copy()
# replace training parts with their state dicts
config_to_save["model"] = config_to_save["model"].state_dict()
config_to_save["optimizer"] = config_to_save["optimizer"].state_dict()
config_to_save["scheduler"] = config_to_save["scheduler"].state_dict()
# save training state
torch.save(config_to_save, checkpoint_path)
def create_config_class(config: dict, sample_batch: dict) -> object:
class ConfigClass:
def __init__(self):
# Feature sizes
self.static_categorical_inp_lens = []
self.temporal_known_categorical_inp_lens = []
self.temporal_observed_categorical_inp_lens = []
model_parameters = config["model_parameters"]
self.example_length = model_parameters["encoder_length"] + model_parameters["decoder_length"]
self.encoder_length = model_parameters["encoder_length"]
self.n_head = model_parameters["attention_heads"]
self.hidden_size = model_parameters["state_size"]
self.dropout = model_parameters["dropout"]
self.attn_dropout = model_parameters["attention_dropout"]
self.quantiles = model_parameters["output_quantiles"]
self.use_past_targets = model_parameters["use_past_targets"]
#### Derived variables ####
self.temporal_known_continuous_inp_size = sample_batch["k_cont"].shape[2]
self.temporal_observed_continuous_inp_size = sample_batch["o_cont"].shape[2]
self.temporal_target_size = sample_batch["target"].shape[2]
self.static_continuous_inp_size = sample_batch["s_cont"].shape[2]
self.num_static_vars = self.static_continuous_inp_size + len(self.static_categorical_inp_lens)
self.num_future_vars = self.temporal_known_continuous_inp_size + len(
self.temporal_known_categorical_inp_lens)
if self.use_past_targets:
self.num_historic_vars = self.num_future_vars + self.temporal_observed_continuous_inp_size + self.temporal_target_size + len(
self.temporal_observed_categorical_inp_lens)
else:
self.num_historic_vars = self.num_future_vars + self.temporal_observed_continuous_inp_size + len(
self.temporal_observed_categorical_inp_lens)
# self.num_historic_vars = sum([self.num_future_vars,
# self.temporal_observed_continuous_inp_size,
# self.temporal_target_size,
# len(self.temporal_observed_categorical_inp_lens),
# ])
self.target_size = self.temporal_target_size
return ConfigClass()
@@ -0,0 +1,164 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
import matplotlib.pyplot as plt
import numpy as np
import math
from math import sqrt
import os
class AutoCorrelation(nn.Module):
"""
AutoCorrelation Mechanism with the following two phases:
(1) period-based dependencies discovery
(2) time delay aggregation
This block can replace the self-attention family mechanism seamlessly.
"""
def __init__(self, mask_flag=True, factor=1, scale=None, attention_dropout=0.1, output_attention=False):
super(AutoCorrelation, self).__init__()
self.factor = factor
self.scale = scale
self.mask_flag = mask_flag
self.output_attention = output_attention
self.dropout = nn.Dropout(attention_dropout)
def time_delay_agg_training(self, values, corr):
"""
SpeedUp version of Autocorrelation (a batch-normalization style design)
This is for the training phase.
"""
head = values.shape[1]
channel = values.shape[2]
length = values.shape[3]
# find top k
top_k = int(self.factor * math.log(length))
mean_value = torch.mean(torch.mean(corr, dim=1), dim=1)
index = torch.topk(torch.mean(mean_value, dim=0), top_k, dim=-1)[1]
weights = torch.stack([mean_value[:, index[i]] for i in range(top_k)], dim=-1)
# update corr
tmp_corr = torch.softmax(weights, dim=-1)
# aggregation
tmp_values = values
delays_agg = torch.zeros_like(values).float()
for i in range(top_k):
pattern = torch.roll(tmp_values, -int(index[i]), -1)
delays_agg = delays_agg + pattern * \
(tmp_corr[:, i].unsqueeze(1).unsqueeze(1).unsqueeze(1).repeat(1, head, channel, length))
return delays_agg
def time_delay_agg_inference(self, values, corr):
"""
SpeedUp version of Autocorrelation (a batch-normalization style design)
This is for the inference phase.
"""
batch = values.shape[0]
head = values.shape[1]
channel = values.shape[2]
length = values.shape[3]
# index init
init_index = torch.arange(length).unsqueeze(0).unsqueeze(0).unsqueeze(0).repeat(batch, head, channel, 1).cuda()
# find top k
top_k = int(self.factor * math.log(length))
mean_value = torch.mean(torch.mean(corr, dim=1), dim=1)
weights = torch.topk(mean_value, top_k, dim=-1)[0]
delay = torch.topk(mean_value, top_k, dim=-1)[1]
# update corr
tmp_corr = torch.softmax(weights, dim=-1)
# aggregation
tmp_values = values.repeat(1, 1, 1, 2)
delays_agg = torch.zeros_like(values).float()
for i in range(top_k):
tmp_delay = init_index + delay[:, i].unsqueeze(1).unsqueeze(1).unsqueeze(1).repeat(1, head, channel, length)
pattern = torch.gather(tmp_values, dim=-1, index=tmp_delay)
delays_agg = delays_agg + pattern * \
(tmp_corr[:, i].unsqueeze(1).unsqueeze(1).unsqueeze(1).repeat(1, head, channel, length))
return delays_agg
def time_delay_agg_full(self, values, corr):
"""
Standard version of Autocorrelation
"""
batch = values.shape[0]
head = values.shape[1]
channel = values.shape[2]
length = values.shape[3]
# index init
init_index = torch.arange(length).unsqueeze(0).unsqueeze(0).unsqueeze(0).repeat(batch, head, channel, 1).cuda()
# find top k
top_k = int(self.factor * math.log(length))
weights = torch.topk(corr, top_k, dim=-1)[0]
delay = torch.topk(corr, top_k, dim=-1)[1]
# update corr
tmp_corr = torch.softmax(weights, dim=-1)
# aggregation
tmp_values = values.repeat(1, 1, 1, 2)
delays_agg = torch.zeros_like(values).float()
for i in range(top_k):
tmp_delay = init_index + delay[..., i].unsqueeze(-1)
pattern = torch.gather(tmp_values, dim=-1, index=tmp_delay)
delays_agg = delays_agg + pattern * (tmp_corr[..., i].unsqueeze(-1))
return delays_agg
def forward(self, queries, keys, values, attn_mask):
B, L, H, E = queries.shape
_, S, _, D = values.shape
if L > S:
zeros = torch.zeros_like(queries[:, :(L - S), :]).float()
values = torch.cat([values, zeros], dim=1)
keys = torch.cat([keys, zeros], dim=1)
else:
values = values[:, :L, :, :]
keys = keys[:, :L, :, :]
# period-based dependencies
q_fft = torch.fft.rfft(queries.permute(0, 2, 3, 1).contiguous(), dim=-1)
k_fft = torch.fft.rfft(keys.permute(0, 2, 3, 1).contiguous(), dim=-1)
res = q_fft * torch.conj(k_fft)
corr = torch.fft.irfft(res, dim=-1)
# time delay agg
if self.training:
V = self.time_delay_agg_training(values.permute(0, 2, 3, 1).contiguous(), corr).permute(0, 3, 1, 2)
else:
V = self.time_delay_agg_inference(values.permute(0, 2, 3, 1).contiguous(), corr).permute(0, 3, 1, 2)
if self.output_attention:
return (V.contiguous(), corr.permute(0, 3, 1, 2))
else:
return (V.contiguous(), None)
class AutoCorrelationLayer(nn.Module):
def __init__(self, correlation, d_model, n_heads, d_keys=None,
d_values=None):
super(AutoCorrelationLayer, self).__init__()
d_keys = d_keys or (d_model // n_heads)
d_values = d_values or (d_model // n_heads)
self.inner_correlation = correlation
self.query_projection = nn.Linear(d_model, d_keys * n_heads)
self.key_projection = nn.Linear(d_model, d_keys * n_heads)
self.value_projection = nn.Linear(d_model, d_values * n_heads)
self.out_projection = nn.Linear(d_values * n_heads, d_model)
self.n_heads = n_heads
def forward(self, queries, keys, values, attn_mask):
B, L, _ = queries.shape
_, S, _ = keys.shape
H = self.n_heads
queries = self.query_projection(queries).view(B, L, H, -1)
keys = self.key_projection(keys).view(B, S, H, -1)
values = self.value_projection(values).view(B, S, H, -1)
out, attn = self.inner_correlation(
queries,
keys,
values,
attn_mask
)
out = out.view(B, L, -1)
return self.out_projection(out), attn
@@ -0,0 +1,173 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
class my_Layernorm(nn.Module):
"""
Special designed layernorm for the seasonal part
"""
def __init__(self, channels):
super(my_Layernorm, self).__init__()
self.layernorm = nn.LayerNorm(channels)
def forward(self, x):
x_hat = self.layernorm(x)
bias = torch.mean(x_hat, dim=1).unsqueeze(1).repeat(1, x.shape[1], 1)
return x_hat - bias
class moving_avg(nn.Module):
"""
Moving average block to highlight the trend of time series
"""
def __init__(self, kernel_size, stride):
super(moving_avg, self).__init__()
self.kernel_size = kernel_size
self.avg = nn.AvgPool1d(kernel_size=kernel_size, stride=stride, padding=0)
def forward(self, x):
# padding on the both ends of time series
front = x[:, 0:1, :].repeat(1, (self.kernel_size - 1) // 2, 1)
end = x[:, -1:, :].repeat(1, (self.kernel_size - 1) // 2, 1)
x = torch.cat([front, x, end], dim=1)
x = self.avg(x.permute(0, 2, 1))
x = x.permute(0, 2, 1)
return x
class series_decomp(nn.Module):
"""
Series decomposition block
"""
def __init__(self, kernel_size):
super(series_decomp, self).__init__()
self.moving_avg = moving_avg(kernel_size, stride=1)
def forward(self, x):
moving_mean = self.moving_avg(x)
res = x - moving_mean
return res, moving_mean
class EncoderLayer(nn.Module):
"""
Autoformer encoder layer with the progressive decomposition architecture
"""
def __init__(self, attention, d_model, d_ff=None, moving_avg=25, dropout=0.1, activation="relu"):
super(EncoderLayer, self).__init__()
d_ff = d_ff or 4 * d_model
self.attention = attention
self.conv1 = nn.Conv1d(in_channels=d_model, out_channels=d_ff, kernel_size=1, bias=False)
self.conv2 = nn.Conv1d(in_channels=d_ff, out_channels=d_model, kernel_size=1, bias=False)
self.decomp1 = series_decomp(moving_avg)
self.decomp2 = series_decomp(moving_avg)
self.dropout = nn.Dropout(dropout)
self.activation = F.relu if activation == "relu" else F.gelu
def forward(self, x, attn_mask=None):
new_x, attn = self.attention(
x, x, x,
attn_mask=attn_mask
)
x = x + self.dropout(new_x)
x, _ = self.decomp1(x)
y = x
y = self.dropout(self.activation(self.conv1(y.transpose(-1, 1))))
y = self.dropout(self.conv2(y).transpose(-1, 1))
res, _ = self.decomp2(x + y)
return res, attn
class Encoder(nn.Module):
"""
Autoformer encoder
"""
def __init__(self, attn_layers, conv_layers=None, norm_layer=None):
super(Encoder, self).__init__()
self.attn_layers = nn.ModuleList(attn_layers)
self.conv_layers = nn.ModuleList(conv_layers) if conv_layers is not None else None
self.norm = norm_layer
def forward(self, x, attn_mask=None):
attns = []
if self.conv_layers is not None:
for attn_layer, conv_layer in zip(self.attn_layers, self.conv_layers):
x, attn = attn_layer(x, attn_mask=attn_mask)
x = conv_layer(x)
attns.append(attn)
x, attn = self.attn_layers[-1](x)
attns.append(attn)
else:
for attn_layer in self.attn_layers:
x, attn = attn_layer(x, attn_mask=attn_mask)
attns.append(attn)
if self.norm is not None:
x = self.norm(x)
return x, attns
class DecoderLayer(nn.Module):
"""
Autoformer decoder layer with the progressive decomposition architecture
"""
def __init__(self, self_attention, cross_attention, d_model, c_out, d_ff=None,
moving_avg=25, dropout=0.1, activation="relu"):
super(DecoderLayer, self).__init__()
d_ff = d_ff or 4 * d_model
self.self_attention = self_attention
self.cross_attention = cross_attention
self.conv1 = nn.Conv1d(in_channels=d_model, out_channels=d_ff, kernel_size=1, bias=False)
self.conv2 = nn.Conv1d(in_channels=d_ff, out_channels=d_model, kernel_size=1, bias=False)
self.decomp1 = series_decomp(moving_avg)
self.decomp2 = series_decomp(moving_avg)
self.decomp3 = series_decomp(moving_avg)
self.dropout = nn.Dropout(dropout)
self.projection = nn.Conv1d(in_channels=d_model, out_channels=c_out, kernel_size=3, stride=1, padding=1,
padding_mode='circular', bias=False)
self.activation = F.relu if activation == "relu" else F.gelu
def forward(self, x, cross, x_mask=None, cross_mask=None):
x = x + self.dropout(self.self_attention(
x, x, x,
attn_mask=x_mask
)[0])
x, trend1 = self.decomp1(x)
x = x + self.dropout(self.cross_attention(
x, cross, cross,
attn_mask=cross_mask
)[0])
x, trend2 = self.decomp2(x)
y = x
y = self.dropout(self.activation(self.conv1(y.transpose(-1, 1))))
y = self.dropout(self.conv2(y).transpose(-1, 1))
x, trend3 = self.decomp3(x + y)
residual_trend = trend1 + trend2 + trend3
residual_trend = self.projection(residual_trend.permute(0, 2, 1)).transpose(1, 2)
return x, residual_trend
class Decoder(nn.Module):
"""
Autoformer encoder
"""
def __init__(self, layers, norm_layer=None, projection=None):
super(Decoder, self).__init__()
self.layers = nn.ModuleList(layers)
self.norm = norm_layer
self.projection = projection
def forward(self, x, cross, x_mask=None, cross_mask=None, trend=None):
for layer in self.layers:
x, residual_trend = layer(x, cross, x_mask=x_mask, cross_mask=cross_mask)
trend = trend + residual_trend
if self.norm is not None:
x = self.norm(x)
if self.projection is not None:
x = self.projection(x)
return x, trend
@@ -0,0 +1,164 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch.nn.utils import weight_norm
import math
class PositionalEmbedding(nn.Module):
def __init__(self, d_model, max_len=5000):
super(PositionalEmbedding, self).__init__()
# Compute the positional encodings once in log space.
pe = torch.zeros(max_len, d_model).float()
pe.require_grad = False
position = torch.arange(0, max_len).float().unsqueeze(1)
div_term = (torch.arange(0, d_model, 2).float() * -(math.log(10000.0) / d_model)).exp()
pe[:, 0::2] = torch.sin(position * div_term)
pe[:, 1::2] = torch.cos(position * div_term)
pe = pe.unsqueeze(0)
self.register_buffer('pe', pe)
def forward(self, x):
return self.pe[:, :x.size(1)]
class TokenEmbedding(nn.Module):
def __init__(self, c_in, d_model):
super(TokenEmbedding, self).__init__()
padding = 1 if torch.__version__ >= '1.5.0' else 2
self.tokenConv = nn.Conv1d(in_channels=c_in, out_channels=d_model,
kernel_size=3, padding=padding, padding_mode='circular', bias=False)
for m in self.modules():
if isinstance(m, nn.Conv1d):
nn.init.kaiming_normal_(m.weight, mode='fan_in', nonlinearity='leaky_relu')
def forward(self, x):
x = self.tokenConv(x.permute(0, 2, 1)).transpose(1, 2)
return x
class FixedEmbedding(nn.Module):
def __init__(self, c_in, d_model):
super(FixedEmbedding, self).__init__()
w = torch.zeros(c_in, d_model).float()
w.require_grad = False
position = torch.arange(0, c_in).float().unsqueeze(1)
div_term = (torch.arange(0, d_model, 2).float() * -(math.log(10000.0) / d_model)).exp()
w[:, 0::2] = torch.sin(position * div_term)
w[:, 1::2] = torch.cos(position * div_term)
self.emb = nn.Embedding(c_in, d_model)
self.emb.weight = nn.Parameter(w, requires_grad=False)
def forward(self, x):
return self.emb(x).detach()
class TemporalEmbedding(nn.Module):
def __init__(self, d_model, embed_type='fixed', freq='h'):
super(TemporalEmbedding, self).__init__()
minute_size = 4
hour_size = 24
weekday_size = 7
day_size = 32
month_size = 13
Embed = FixedEmbedding if embed_type == 'fixed' else nn.Embedding
if freq == 't':
self.minute_embed = Embed(minute_size, d_model)
self.hour_embed = Embed(hour_size, d_model)
self.weekday_embed = Embed(weekday_size, d_model)
self.day_embed = Embed(day_size, d_model)
self.month_embed = Embed(month_size, d_model)
def forward(self, x):
x = x.long()
minute_x = self.minute_embed(x[:, :, 4]) if hasattr(self, 'minute_embed') else 0.
hour_x = self.hour_embed(x[:, :, 3])
weekday_x = self.weekday_embed(x[:, :, 2])
day_x = self.day_embed(x[:, :, 1])
month_x = self.month_embed(x[:, :, 0])
return hour_x + weekday_x + day_x + month_x + minute_x
class TimeFeatureEmbedding(nn.Module):
def __init__(self, d_model, embed_type='timeF', freq='h'):
super(TimeFeatureEmbedding, self).__init__()
freq_map = {'h': 4, 't': 5, 's': 6, 'm': 1, 'a': 1, 'w': 2, 'd': 3, 'b': 3}
d_inp = freq_map[freq]
self.embed = nn.Linear(d_inp, d_model, bias=False)
def forward(self, x):
return self.embed(x)
class DataEmbedding(nn.Module):
def __init__(self, c_in, d_model, embed_type='fixed', freq='h', dropout=0.1):
super(DataEmbedding, self).__init__()
self.value_embedding = TokenEmbedding(c_in=c_in, d_model=d_model)
self.position_embedding = PositionalEmbedding(d_model=d_model)
self.temporal_embedding = TemporalEmbedding(d_model=d_model, embed_type=embed_type,
freq=freq) if embed_type != 'timeF' else TimeFeatureEmbedding(
d_model=d_model, embed_type=embed_type, freq=freq)
self.dropout = nn.Dropout(p=dropout)
def forward(self, x, x_mark):
x = self.value_embedding(x) + self.temporal_embedding(x_mark) + self.position_embedding(x)
return self.dropout(x)
class DataEmbedding_wo_pos(nn.Module):
def __init__(self, c_in, d_model, embed_type='fixed', freq='h', dropout=0.1):
super(DataEmbedding_wo_pos, self).__init__()
self.value_embedding = TokenEmbedding(c_in=c_in, d_model=d_model)
self.position_embedding = PositionalEmbedding(d_model=d_model)
self.temporal_embedding = TemporalEmbedding(d_model=d_model, embed_type=embed_type,
freq=freq) if embed_type != 'timeF' else TimeFeatureEmbedding(
d_model=d_model, embed_type=embed_type, freq=freq)
self.dropout = nn.Dropout(p=dropout)
def forward(self, x, x_mark):
x = self.value_embedding(x) + self.temporal_embedding(x_mark)
return self.dropout(x)
class DataEmbedding_wo_pos_temp(nn.Module):
def __init__(self, c_in, d_model, embed_type='fixed', freq='h', dropout=0.1):
super(DataEmbedding_wo_pos_temp, self).__init__()
self.value_embedding = TokenEmbedding(c_in=c_in, d_model=d_model)
self.position_embedding = PositionalEmbedding(d_model=d_model)
self.temporal_embedding = TemporalEmbedding(d_model=d_model, embed_type=embed_type,
freq=freq) if embed_type != 'timeF' else TimeFeatureEmbedding(
d_model=d_model, embed_type=embed_type, freq=freq)
self.dropout = nn.Dropout(p=dropout)
def forward(self, x, x_mark):
x = self.value_embedding(x)
return self.dropout(x)
class DataEmbedding_wo_temp(nn.Module):
def __init__(self, c_in, d_model, embed_type='fixed', freq='h', dropout=0.1):
super(DataEmbedding_wo_temp, self).__init__()
self.value_embedding = TokenEmbedding(c_in=c_in, d_model=d_model)
self.position_embedding = PositionalEmbedding(d_model=d_model)
self.temporal_embedding = TemporalEmbedding(d_model=d_model, embed_type=embed_type,
freq=freq) if embed_type != 'timeF' else TimeFeatureEmbedding(
d_model=d_model, embed_type=embed_type, freq=freq)
self.dropout = nn.Dropout(p=dropout)
def forward(self, x, x_mark):
x = self.value_embedding(x) + self.position_embedding(x)
return self.dropout(x)
@@ -0,0 +1,429 @@
__all__ = ['PatchTST_backbone']
# Cell
from typing import Callable, Optional
import torch
from torch import nn
from torch import Tensor
import torch.nn.functional as F
import numpy as np
# from collections import OrderedDict
from models.third_party.patch_tst.layers.PatchTST_layers import *
from models.third_party.patch_tst.layers.RevIN import RevIN
class CustomHead(nn.Module):
def __init__(self, output_dim, n_vars, target_window, nf, head_dropout=0):
super().__init__()
self.flatten = nn.Flatten(start_dim=-3)
self.linear = nn.Linear(nf * n_vars, output_dim * target_window)
self.dropout = nn.Dropout(head_dropout)
self.target_window = target_window
self.output_dim = output_dim
def forward(self, x): # x: [bs x nvars x d_model x patch_num]
x = self.flatten(x) # [bs x (nf * nvars)]
x = self.linear(x) # [bs x (target_window * output_dim)]
x = self.dropout(x)
x = x.view(x.size(0), self.target_window, self.output_dim) # [bs x target_window x output_dim]
# permute to match intended structure
x = x.permute(0, 2, 1) # [bs x output_dim x target_window]
return x
# Cell
class PatchTST_backbone(nn.Module):
def __init__(self, c_in: int,
context_window: int, target_window: int, patch_len: int, stride: int,
# extras
dec_out: int = 1,
seq_pred: bool = False,
#
max_seq_len: Optional[int] = 1024,
n_layers: int = 3, d_model=128, n_heads=16, d_k: Optional[int] = None, d_v: Optional[int] = None,
d_ff: int = 256, norm: str = 'BatchNorm', attn_dropout: float = 0., dropout: float = 0.,
act: str = "gelu", key_padding_mask: bool = 'auto',
padding_var: Optional[int] = None, attn_mask: Optional[Tensor] = None, res_attention: bool = True,
pre_norm: bool = False, store_attn: bool = False,
pe: str = 'zeros', learn_pe: bool = True, fc_dropout: float = 0., head_dropout=0, padding_patch=None,
pretrain_head: bool = False, head_type='flatten', individual=False, revin=True, affine=True,
subtract_last=False,
verbose: bool = False, **kwargs):
super().__init__()
# RevIn
self.revin = revin
if self.revin: self.revin_layer = RevIN(c_in, affine=affine, subtract_last=subtract_last)
# Patching
self.patch_len = patch_len
self.stride = stride
self.padding_patch = padding_patch
patch_num = int((context_window - patch_len) / stride + 1)
if padding_patch == 'end': # can be modified to general case
self.padding_patch_layer = nn.ReplicationPad1d((0, stride))
patch_num += 1
# Backbone
self.backbone = TSTiEncoder(c_in, patch_num=patch_num, patch_len=patch_len, max_seq_len=max_seq_len,
n_layers=n_layers, d_model=d_model, n_heads=n_heads, d_k=d_k, d_v=d_v, d_ff=d_ff,
attn_dropout=attn_dropout, dropout=dropout, act=act,
key_padding_mask=key_padding_mask, padding_var=padding_var,
attn_mask=attn_mask, res_attention=res_attention, pre_norm=pre_norm,
store_attn=store_attn,
pe=pe, learn_pe=learn_pe, verbose=verbose, **kwargs)
# Head
self.head_nf = d_model * patch_num
self.n_vars = c_in
self.pretrain_head = pretrain_head
self.head_type = head_type
self.individual = individual
# extras for non-sequence prediction
self.seq_pred = seq_pred
self.dec_out = dec_out
if self.pretrain_head:
self.head = self.create_pretrain_head(self.head_nf, c_in,
fc_dropout) # custom head passed as a partial func with all its kwargs
elif not self.seq_pred:
self.head = CustomHead(output_dim=self.dec_out,
n_vars=self.n_vars,
target_window=target_window,
nf=self.head_nf,
head_dropout=head_dropout)
elif head_type == 'flatten':
self.head = Flatten_Head(self.individual, self.n_vars, self.head_nf, target_window,
head_dropout=head_dropout)
def forward(self, z): # z: [bs x nvars x seq_len]
# norm
if self.revin:
z = z.permute(0, 2, 1)
z = self.revin_layer(z, 'norm')
z = z.permute(0, 2, 1)
# do patching
if self.padding_patch == 'end':
z = self.padding_patch_layer(z)
z = z.unfold(dimension=-1, size=self.patch_len, step=self.stride) # z: [bs x nvars x patch_num x patch_len]
z = z.permute(0, 1, 3, 2) # z: [bs x nvars x patch_len x patch_num]
# model
z = self.backbone(z) # z: [bs x nvars x d_model x patch_num]
z = self.head(z) # z: [bs x nvars x target_window]
# denorm
if self.revin:
z = z.permute(0, 2, 1)
z = self.revin_layer(z, 'denorm')
z = z.permute(0, 2, 1)
return z
def create_pretrain_head(self, head_nf, vars, dropout):
return nn.Sequential(nn.Dropout(dropout),
nn.Conv1d(head_nf, vars, 1)
)
class Flatten_Head(nn.Module):
def __init__(self, individual, n_vars, nf, target_window, head_dropout=0):
super().__init__()
self.individual = individual
self.n_vars = n_vars
if self.individual:
self.linears = nn.ModuleList()
self.dropouts = nn.ModuleList()
self.flattens = nn.ModuleList()
for i in range(self.n_vars):
self.flattens.append(nn.Flatten(start_dim=-2))
self.linears.append(nn.Linear(nf, target_window))
self.dropouts.append(nn.Dropout(head_dropout))
else:
self.flatten = nn.Flatten(start_dim=-2)
self.linear = nn.Linear(nf, target_window)
self.dropout = nn.Dropout(head_dropout)
def forward(self, x): # x: [bs x nvars x d_model x patch_num]
if self.individual:
x_out = []
for i in range(self.n_vars):
z = self.flattens[i](x[:, i, :, :]) # z: [bs x d_model * patch_num]
z = self.linears[i](z) # z: [bs x target_window]
z = self.dropouts[i](z)
x_out.append(z)
x = torch.stack(x_out, dim=1) # x: [bs x nvars x target_window]
else:
x = self.flatten(x)
x = self.linear(x)
x = self.dropout(x)
return x
class TSTiEncoder(nn.Module): # i means channel-independent
def __init__(self, c_in, patch_num, patch_len, max_seq_len=1024,
n_layers=3, d_model=128, n_heads=16, d_k=None, d_v=None,
d_ff=256, norm='BatchNorm', attn_dropout=0., dropout=0., act="gelu", store_attn=False,
key_padding_mask='auto', padding_var=None, attn_mask=None, res_attention=True, pre_norm=False,
pe='zeros', learn_pe=True, verbose=False, **kwargs):
super().__init__()
self.patch_num = patch_num
self.patch_len = patch_len
# Input encoding
q_len = patch_num
self.W_P = nn.Linear(patch_len, d_model) # Eq 1: projection of feature vectors onto a d-dim vector space
self.seq_len = q_len
# Positional encoding
self.W_pos = positional_encoding(pe, learn_pe, q_len, d_model)
# Residual dropout
self.dropout = nn.Dropout(dropout)
# Encoder
self.encoder = TSTEncoder(q_len, d_model, n_heads, d_k=d_k, d_v=d_v, d_ff=d_ff, norm=norm,
attn_dropout=attn_dropout, dropout=dropout,
pre_norm=pre_norm, activation=act, res_attention=res_attention, n_layers=n_layers,
store_attn=store_attn)
def forward(self, x) -> Tensor: # x: [bs x nvars x patch_len x patch_num]
n_vars = x.shape[1]
# Input encoding
x = x.permute(0, 1, 3, 2) # x: [bs x nvars x patch_num x patch_len]
x = self.W_P(x) # x: [bs x nvars x patch_num x d_model]
u = torch.reshape(x, (x.shape[0] * x.shape[1], x.shape[2], x.shape[3])) # u: [bs * nvars x patch_num x d_model]
u = self.dropout(u + self.W_pos) # u: [bs * nvars x patch_num x d_model]
# Encoder
z = self.encoder(u) # z: [bs * nvars x patch_num x d_model]
z = torch.reshape(z, (-1, n_vars, z.shape[-2], z.shape[-1])) # z: [bs x nvars x patch_num x d_model]
z = z.permute(0, 1, 3, 2) # z: [bs x nvars x d_model x patch_num]
return z
# Cell
class TSTEncoder(nn.Module):
def __init__(self, q_len, d_model, n_heads, d_k=None, d_v=None, d_ff=None,
norm='BatchNorm', attn_dropout=0., dropout=0., activation='gelu',
res_attention=False, n_layers=1, pre_norm=False, store_attn=False):
super().__init__()
self.layers = nn.ModuleList(
[TSTEncoderLayer(q_len, d_model, n_heads=n_heads, d_k=d_k, d_v=d_v, d_ff=d_ff, norm=norm,
attn_dropout=attn_dropout, dropout=dropout,
activation=activation, res_attention=res_attention,
pre_norm=pre_norm, store_attn=store_attn) for i in range(n_layers)])
self.res_attention = res_attention
def forward(self, src: Tensor, key_padding_mask: Optional[Tensor] = None, attn_mask: Optional[Tensor] = None):
output = src
scores = None
if self.res_attention:
for mod in self.layers: output, scores = mod(output, prev=scores, key_padding_mask=key_padding_mask,
attn_mask=attn_mask)
return output
else:
for mod in self.layers: output = mod(output, key_padding_mask=key_padding_mask, attn_mask=attn_mask)
return output
class TSTEncoderLayer(nn.Module):
def __init__(self, q_len, d_model, n_heads, d_k=None, d_v=None, d_ff=256, store_attn=False,
norm='BatchNorm', attn_dropout=0, dropout=0., bias=True, activation="gelu", res_attention=False,
pre_norm=False):
super().__init__()
assert not d_model % n_heads, f"d_model ({d_model}) must be divisible by n_heads ({n_heads})"
d_k = d_model // n_heads if d_k is None else d_k
d_v = d_model // n_heads if d_v is None else d_v
# Multi-Head attention
self.res_attention = res_attention
self.self_attn = _MultiheadAttention(d_model, n_heads, d_k, d_v, attn_dropout=attn_dropout,
proj_dropout=dropout, res_attention=res_attention)
# Add & Norm
self.dropout_attn = nn.Dropout(dropout)
if "batch" in norm.lower():
self.norm_attn = nn.Sequential(Transpose(1, 2), nn.BatchNorm1d(d_model), Transpose(1, 2))
else:
self.norm_attn = nn.LayerNorm(d_model)
# Position-wise Feed-Forward
self.ff = nn.Sequential(nn.Linear(d_model, d_ff, bias=bias),
get_activation_fn(activation),
nn.Dropout(dropout),
nn.Linear(d_ff, d_model, bias=bias))
# Add & Norm
self.dropout_ffn = nn.Dropout(dropout)
if "batch" in norm.lower():
self.norm_ffn = nn.Sequential(Transpose(1, 2), nn.BatchNorm1d(d_model), Transpose(1, 2))
else:
self.norm_ffn = nn.LayerNorm(d_model)
self.pre_norm = pre_norm
self.store_attn = store_attn
def forward(self, src: Tensor, prev: Optional[Tensor] = None, key_padding_mask: Optional[Tensor] = None,
attn_mask: Optional[Tensor] = None) -> Tensor:
# Multi-Head attention sublayer
if self.pre_norm:
src = self.norm_attn(src)
## Multi-Head attention
if self.res_attention:
src2, attn, scores = self.self_attn(src, src, src, prev, key_padding_mask=key_padding_mask,
attn_mask=attn_mask)
else:
src2, attn = self.self_attn(src, src, src, key_padding_mask=key_padding_mask, attn_mask=attn_mask)
if self.store_attn:
self.attn = attn
## Add & Norm
src = src + self.dropout_attn(src2) # Add: residual connection with residual dropout
if not self.pre_norm:
src = self.norm_attn(src)
# Feed-forward sublayer
if self.pre_norm:
src = self.norm_ffn(src)
## Position-wise Feed-Forward
src2 = self.ff(src)
## Add & Norm
src = src + self.dropout_ffn(src2) # Add: residual connection with residual dropout
if not self.pre_norm:
src = self.norm_ffn(src)
if self.res_attention:
return src, scores
else:
return src
class _MultiheadAttention(nn.Module):
def __init__(self, d_model, n_heads, d_k=None, d_v=None, res_attention=False, attn_dropout=0., proj_dropout=0.,
qkv_bias=True, lsa=False):
"""Multi Head Attention Layer
Input shape:
Q: [batch_size (bs) x max_q_len x d_model]
K, V: [batch_size (bs) x q_len x d_model]
mask: [q_len x q_len]
"""
super().__init__()
d_k = d_model // n_heads if d_k is None else d_k
d_v = d_model // n_heads if d_v is None else d_v
self.n_heads, self.d_k, self.d_v = n_heads, d_k, d_v
self.W_Q = nn.Linear(d_model, d_k * n_heads, bias=qkv_bias)
self.W_K = nn.Linear(d_model, d_k * n_heads, bias=qkv_bias)
self.W_V = nn.Linear(d_model, d_v * n_heads, bias=qkv_bias)
# Scaled Dot-Product Attention (multiple heads)
self.res_attention = res_attention
self.sdp_attn = _ScaledDotProductAttention(d_model, n_heads, attn_dropout=attn_dropout,
res_attention=self.res_attention, lsa=lsa)
# Poject output
self.to_out = nn.Sequential(nn.Linear(n_heads * d_v, d_model), nn.Dropout(proj_dropout))
def forward(self, Q: Tensor, K: Optional[Tensor] = None, V: Optional[Tensor] = None, prev: Optional[Tensor] = None,
key_padding_mask: Optional[Tensor] = None, attn_mask: Optional[Tensor] = None):
bs = Q.size(0)
if K is None: K = Q
if V is None: V = Q
# Linear (+ split in multiple heads)
q_s = self.W_Q(Q).view(bs, -1, self.n_heads, self.d_k).transpose(1,
2) # q_s : [bs x n_heads x max_q_len x d_k]
k_s = self.W_K(K).view(bs, -1, self.n_heads, self.d_k).permute(0, 2, 3,
1) # k_s : [bs x n_heads x d_k x q_len] - transpose(1,2) + transpose(2,3)
v_s = self.W_V(V).view(bs, -1, self.n_heads, self.d_v).transpose(1, 2) # v_s : [bs x n_heads x q_len x d_v]
# Apply Scaled Dot-Product Attention (multiple heads)
if self.res_attention:
output, attn_weights, attn_scores = self.sdp_attn(q_s, k_s, v_s, prev=prev,
key_padding_mask=key_padding_mask, attn_mask=attn_mask)
else:
output, attn_weights = self.sdp_attn(q_s, k_s, v_s, key_padding_mask=key_padding_mask, attn_mask=attn_mask)
# output: [bs x n_heads x q_len x d_v], attn: [bs x n_heads x q_len x q_len], scores: [bs x n_heads x max_q_len x q_len]
# back to the original inputs dimensions
output = output.transpose(1, 2).contiguous().view(bs, -1,
self.n_heads * self.d_v) # output: [bs x q_len x n_heads * d_v]
output = self.to_out(output)
if self.res_attention:
return output, attn_weights, attn_scores
else:
return output, attn_weights
class _ScaledDotProductAttention(nn.Module):
r"""Scaled Dot-Product Attention module (Attention is all you need by Vaswani et al., 2017) with optional residual attention from previous layer
(Realformer: Transformer likes residual attention by He et al, 2020) and locality self sttention (Vision Transformer for Small-Size Datasets
by Lee et al, 2021)"""
def __init__(self, d_model, n_heads, attn_dropout=0., res_attention=False, lsa=False):
super().__init__()
self.attn_dropout = nn.Dropout(attn_dropout)
self.res_attention = res_attention
head_dim = d_model // n_heads
self.scale = nn.Parameter(torch.tensor(head_dim ** -0.5), requires_grad=lsa)
self.lsa = lsa
def forward(self, q: Tensor, k: Tensor, v: Tensor, prev: Optional[Tensor] = None,
key_padding_mask: Optional[Tensor] = None, attn_mask: Optional[Tensor] = None):
'''
Input shape:
q : [bs x n_heads x max_q_len x d_k]
k : [bs x n_heads x d_k x seq_len]
v : [bs x n_heads x seq_len x d_v]
prev : [bs x n_heads x q_len x seq_len]
key_padding_mask: [bs x seq_len]
attn_mask : [1 x seq_len x seq_len]
Output shape:
output: [bs x n_heads x q_len x d_v]
attn : [bs x n_heads x q_len x seq_len]
scores : [bs x n_heads x q_len x seq_len]
'''
# Scaled MatMul (q, k) - similarity scores for all pairs of positions in an input sequence
attn_scores = torch.matmul(q, k) * self.scale # attn_scores : [bs x n_heads x max_q_len x q_len]
# Add pre-softmax attention scores from the previous layer (optional)
if prev is not None: attn_scores = attn_scores + prev
# Attention mask (optional)
if attn_mask is not None: # attn_mask with shape [q_len x seq_len] - only used when q_len == seq_len
if attn_mask.dtype == torch.bool:
attn_scores.masked_fill_(attn_mask, -np.inf)
else:
attn_scores += attn_mask
# Key padding mask (optional)
if key_padding_mask is not None: # mask with shape [bs x q_len] (only when max_w_len == q_len)
attn_scores.masked_fill_(key_padding_mask.unsqueeze(1).unsqueeze(2), -np.inf)
# normalize the attention weights
attn_weights = F.softmax(attn_scores, dim=-1) # attn_weights : [bs x n_heads x max_q_len x q_len]
attn_weights = self.attn_dropout(attn_weights)
# compute the new values given the attention weights
output = torch.matmul(attn_weights, v) # output: [bs x n_heads x max_q_len x d_v]
if self.res_attention:
return output, attn_weights, attn_scores
else:
return output, attn_weights
@@ -0,0 +1,121 @@
__all__ = ['Transpose', 'get_activation_fn', 'moving_avg', 'series_decomp', 'PositionalEncoding', 'SinCosPosEncoding', 'Coord2dPosEncoding', 'Coord1dPosEncoding', 'positional_encoding']
import torch
from torch import nn
import math
class Transpose(nn.Module):
def __init__(self, *dims, contiguous=False):
super().__init__()
self.dims, self.contiguous = dims, contiguous
def forward(self, x):
if self.contiguous: return x.transpose(*self.dims).contiguous()
else: return x.transpose(*self.dims)
def get_activation_fn(activation):
if callable(activation): return activation()
elif activation.lower() == "relu": return nn.ReLU()
elif activation.lower() == "gelu": return nn.GELU()
raise ValueError(f'{activation} is not available. You can use "relu", "gelu", or a callable')
# decomposition
class moving_avg(nn.Module):
"""
Moving average block to highlight the trend of time series
"""
def __init__(self, kernel_size, stride):
super(moving_avg, self).__init__()
self.kernel_size = kernel_size
self.avg = nn.AvgPool1d(kernel_size=kernel_size, stride=stride, padding=0)
def forward(self, x):
# padding on the both ends of time series
front = x[:, 0:1, :].repeat(1, (self.kernel_size - 1) // 2, 1)
end = x[:, -1:, :].repeat(1, (self.kernel_size - 1) // 2, 1)
x = torch.cat([front, x, end], dim=1)
x = self.avg(x.permute(0, 2, 1))
x = x.permute(0, 2, 1)
return x
class series_decomp(nn.Module):
"""
Series decomposition block
"""
def __init__(self, kernel_size):
super(series_decomp, self).__init__()
self.moving_avg = moving_avg(kernel_size, stride=1)
def forward(self, x):
moving_mean = self.moving_avg(x)
res = x - moving_mean
return res, moving_mean
# pos_encoding
def PositionalEncoding(q_len, d_model, normalize=True):
pe = torch.zeros(q_len, d_model)
position = torch.arange(0, q_len).unsqueeze(1)
div_term = torch.exp(torch.arange(0, d_model, 2) * -(math.log(10000.0) / d_model))
pe[:, 0::2] = torch.sin(position * div_term)
pe[:, 1::2] = torch.cos(position * div_term)
if normalize:
pe = pe - pe.mean()
pe = pe / (pe.std() * 10)
return pe
SinCosPosEncoding = PositionalEncoding
def Coord2dPosEncoding(q_len, d_model, exponential=False, normalize=True, eps=1e-3, verbose=False):
x = .5 if exponential else 1
i = 0
for i in range(100):
cpe = 2 * (torch.linspace(0, 1, q_len).reshape(-1, 1) ** x) * (torch.linspace(0, 1, d_model).reshape(1, -1) ** x) - 1
pv(f'{i:4.0f} {x:5.3f} {cpe.mean():+6.3f}', verbose)
if abs(cpe.mean()) <= eps: break
elif cpe.mean() > eps: x += .001
else: x -= .001
i += 1
if normalize:
cpe = cpe - cpe.mean()
cpe = cpe / (cpe.std() * 10)
return cpe
def Coord1dPosEncoding(q_len, exponential=False, normalize=True):
cpe = (2 * (torch.linspace(0, 1, q_len).reshape(-1, 1)**(.5 if exponential else 1)) - 1)
if normalize:
cpe = cpe - cpe.mean()
cpe = cpe / (cpe.std() * 10)
return cpe
def positional_encoding(pe, learn_pe, q_len, d_model):
# Positional encoding
if pe == None:
W_pos = torch.empty((q_len, d_model)) # pe = None and learn_pe = False can be used to measure impact of pe
nn.init.uniform_(W_pos, -0.02, 0.02)
learn_pe = False
elif pe == 'zero':
W_pos = torch.empty((q_len, 1))
nn.init.uniform_(W_pos, -0.02, 0.02)
elif pe == 'zeros':
W_pos = torch.empty((q_len, d_model))
nn.init.uniform_(W_pos, -0.02, 0.02)
elif pe == 'normal' or pe == 'gauss':
W_pos = torch.zeros((q_len, 1))
torch.nn.init.normal_(W_pos, mean=0.0, std=0.1)
elif pe == 'uniform':
W_pos = torch.zeros((q_len, 1))
nn.init.uniform_(W_pos, a=0.0, b=0.1)
elif pe == 'lin1d': W_pos = Coord1dPosEncoding(q_len, exponential=False, normalize=True)
elif pe == 'exp1d': W_pos = Coord1dPosEncoding(q_len, exponential=True, normalize=True)
elif pe == 'lin2d': W_pos = Coord2dPosEncoding(q_len, d_model, exponential=False, normalize=True)
elif pe == 'exp2d': W_pos = Coord2dPosEncoding(q_len, d_model, exponential=True, normalize=True)
elif pe == 'sincos': W_pos = PositionalEncoding(q_len, d_model, normalize=True)
else: raise ValueError(f"{pe} is not a valid pe (positional encoder. Available types: 'gauss'=='normal', \
'zeros', 'zero', uniform', 'lin1d', 'exp1d', 'lin2d', 'exp2d', 'sincos', None.)")
return nn.Parameter(W_pos, requires_grad=learn_pe)
@@ -0,0 +1,63 @@
# code from https://github.com/ts-kim/RevIN, with minor modifications
import torch
import torch.nn as nn
class RevIN(nn.Module):
def __init__(self, num_features: int, eps=1e-5, affine=True, subtract_last=False):
"""
:param num_features: the number of features or channels
:param eps: a value added for numerical stability
:param affine: if True, RevIN has learnable affine parameters
"""
super(RevIN, self).__init__()
self.num_features = num_features
self.eps = eps
self.affine = affine
self.subtract_last = subtract_last
if self.affine:
self._init_params()
def forward(self, x, mode:str):
if mode == 'norm':
self._get_statistics(x)
x = self._normalize(x)
elif mode == 'denorm':
x = self._denormalize(x)
else: raise NotImplementedError
return x
def _init_params(self):
# initialize RevIN params: (C,)
self.affine_weight = nn.Parameter(torch.ones(self.num_features))
self.affine_bias = nn.Parameter(torch.zeros(self.num_features))
def _get_statistics(self, x):
dim2reduce = tuple(range(1, x.ndim-1))
if self.subtract_last:
self.last = x[:,-1,:].unsqueeze(1)
else:
self.mean = torch.mean(x, dim=dim2reduce, keepdim=True).detach()
self.stdev = torch.sqrt(torch.var(x, dim=dim2reduce, keepdim=True, unbiased=False) + self.eps).detach()
def _normalize(self, x):
if self.subtract_last:
x = x - self.last
else:
x = x - self.mean
x = x / self.stdev
if self.affine:
x = x * self.affine_weight
x = x + self.affine_bias
return x
def _denormalize(self, x):
if self.affine:
x = x - self.affine_bias
x = x / (self.affine_weight + self.eps*self.eps)
x = x * self.stdev
if self.subtract_last:
x = x + self.last
else:
x = x + self.mean
return x
@@ -0,0 +1,166 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
import matplotlib.pyplot as plt
import numpy as np
import math
from math import sqrt
from utils.masking import TriangularCausalMask, ProbMask
import os
class FullAttention(nn.Module):
def __init__(self, mask_flag=True, factor=5, scale=None, attention_dropout=0.1, output_attention=False):
super(FullAttention, self).__init__()
self.scale = scale
self.mask_flag = mask_flag
self.output_attention = output_attention
self.dropout = nn.Dropout(attention_dropout)
def forward(self, queries, keys, values, attn_mask):
B, L, H, E = queries.shape
_, S, _, D = values.shape
scale = self.scale or 1. / sqrt(E)
scores = torch.einsum("blhe,bshe->bhls", queries, keys)
if self.mask_flag:
if attn_mask is None:
attn_mask = TriangularCausalMask(B, L, device=queries.device)
scores.masked_fill_(attn_mask.mask, -np.inf)
A = self.dropout(torch.softmax(scale * scores, dim=-1))
V = torch.einsum("bhls,bshd->blhd", A, values)
if self.output_attention:
return (V.contiguous(), A)
else:
return (V.contiguous(), None)
class ProbAttention(nn.Module):
def __init__(self, mask_flag=True, factor=5, scale=None, attention_dropout=0.1, output_attention=False):
super(ProbAttention, self).__init__()
self.factor = factor
self.scale = scale
self.mask_flag = mask_flag
self.output_attention = output_attention
self.dropout = nn.Dropout(attention_dropout)
def _prob_QK(self, Q, K, sample_k, n_top): # n_top: c*ln(L_q)
# Q [B, H, L, D]
B, H, L_K, E = K.shape
_, _, L_Q, _ = Q.shape
# calculate the sampled Q_K
K_expand = K.unsqueeze(-3).expand(B, H, L_Q, L_K, E)
index_sample = torch.randint(L_K, (L_Q, sample_k)) # real U = U_part(factor*ln(L_k))*L_q
K_sample = K_expand[:, :, torch.arange(L_Q).unsqueeze(1), index_sample, :]
Q_K_sample = torch.matmul(Q.unsqueeze(-2), K_sample.transpose(-2, -1)).squeeze()
# find the Top_k query with sparisty measurement
M = Q_K_sample.max(-1)[0] - torch.div(Q_K_sample.sum(-1), L_K)
M_top = M.topk(n_top, sorted=False)[1]
# use the reduced Q to calculate Q_K
Q_reduce = Q[torch.arange(B)[:, None, None],
torch.arange(H)[None, :, None],
M_top, :] # factor*ln(L_q)
Q_K = torch.matmul(Q_reduce, K.transpose(-2, -1)) # factor*ln(L_q)*L_k
return Q_K, M_top
def _get_initial_context(self, V, L_Q):
B, H, L_V, D = V.shape
if not self.mask_flag:
# V_sum = V.sum(dim=-2)
V_sum = V.mean(dim=-2)
contex = V_sum.unsqueeze(-2).expand(B, H, L_Q, V_sum.shape[-1]).clone()
else: # use mask
assert (L_Q == L_V) # requires that L_Q == L_V, i.e. for self-attention only
contex = V.cumsum(dim=-2)
return contex
def _update_context(self, context_in, V, scores, index, L_Q, attn_mask):
B, H, L_V, D = V.shape
if self.mask_flag:
attn_mask = ProbMask(B, H, L_Q, index, scores, device=V.device)
scores.masked_fill_(attn_mask.mask, -np.inf)
attn = torch.softmax(scores, dim=-1) # nn.Softmax(dim=-1)(scores)
context_in[torch.arange(B)[:, None, None],
torch.arange(H)[None, :, None],
index, :] = torch.matmul(attn, V).type_as(context_in)
if self.output_attention:
attns = (torch.ones([B, H, L_V, L_V]) / L_V).type_as(attn).to(attn.device)
attns[torch.arange(B)[:, None, None], torch.arange(H)[None, :, None], index, :] = attn
return (context_in, attns)
else:
return (context_in, None)
def forward(self, queries, keys, values, attn_mask):
B, L_Q, H, D = queries.shape
_, L_K, _, _ = keys.shape
queries = queries.transpose(2, 1)
keys = keys.transpose(2, 1)
values = values.transpose(2, 1)
U_part = self.factor * np.ceil(np.log(L_K)).astype('int').item() # c*ln(L_k)
u = self.factor * np.ceil(np.log(L_Q)).astype('int').item() # c*ln(L_q)
U_part = U_part if U_part < L_K else L_K
u = u if u < L_Q else L_Q
scores_top, index = self._prob_QK(queries, keys, sample_k=U_part, n_top=u)
# add scale factor
scale = self.scale or 1. / sqrt(D)
if scale is not None:
scores_top = scores_top * scale
# get the context
context = self._get_initial_context(values, L_Q)
# update the context with selected top_k queries
context, attn = self._update_context(context, values, scores_top, index, L_Q, attn_mask)
return context.contiguous(), attn
class AttentionLayer(nn.Module):
def __init__(self, attention, d_model, n_heads, d_keys=None,
d_values=None):
super(AttentionLayer, self).__init__()
d_keys = d_keys or (d_model // n_heads)
d_values = d_values or (d_model // n_heads)
self.inner_attention = attention
self.query_projection = nn.Linear(d_model, d_keys * n_heads)
self.key_projection = nn.Linear(d_model, d_keys * n_heads)
self.value_projection = nn.Linear(d_model, d_values * n_heads)
self.out_projection = nn.Linear(d_values * n_heads, d_model)
self.n_heads = n_heads
def forward(self, queries, keys, values, attn_mask):
B, L, _ = queries.shape
_, S, _ = keys.shape
H = self.n_heads
queries = self.query_projection(queries).view(B, L, H, -1)
keys = self.key_projection(keys).view(B, S, H, -1)
values = self.value_projection(values).view(B, S, H, -1)
out, attn = self.inner_attention(
queries,
keys,
values,
attn_mask
)
out = out.view(B, L, -1)
return self.out_projection(out), attn
@@ -0,0 +1,131 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
class ConvLayer(nn.Module):
def __init__(self, c_in):
super(ConvLayer, self).__init__()
self.downConv = nn.Conv1d(in_channels=c_in,
out_channels=c_in,
kernel_size=3,
padding=2,
padding_mode='circular')
self.norm = nn.BatchNorm1d(c_in)
self.activation = nn.ELU()
self.maxPool = nn.MaxPool1d(kernel_size=3, stride=2, padding=1)
def forward(self, x):
x = self.downConv(x.permute(0, 2, 1))
x = self.norm(x)
x = self.activation(x)
x = self.maxPool(x)
x = x.transpose(1, 2)
return x
class EncoderLayer(nn.Module):
def __init__(self, attention, d_model, d_ff=None, dropout=0.1, activation="relu"):
super(EncoderLayer, self).__init__()
d_ff = d_ff or 4 * d_model
self.attention = attention
self.conv1 = nn.Conv1d(in_channels=d_model, out_channels=d_ff, kernel_size=1)
self.conv2 = nn.Conv1d(in_channels=d_ff, out_channels=d_model, kernel_size=1)
self.norm1 = nn.LayerNorm(d_model)
self.norm2 = nn.LayerNorm(d_model)
self.dropout = nn.Dropout(dropout)
self.activation = F.relu if activation == "relu" else F.gelu
def forward(self, x, attn_mask=None):
new_x, attn = self.attention(
x, x, x,
attn_mask=attn_mask
)
x = x + self.dropout(new_x)
y = x = self.norm1(x)
y = self.dropout(self.activation(self.conv1(y.transpose(-1, 1))))
y = self.dropout(self.conv2(y).transpose(-1, 1))
return self.norm2(x + y), attn
class Encoder(nn.Module):
def __init__(self, attn_layers, conv_layers=None, norm_layer=None):
super(Encoder, self).__init__()
self.attn_layers = nn.ModuleList(attn_layers)
self.conv_layers = nn.ModuleList(conv_layers) if conv_layers is not None else None
self.norm = norm_layer
def forward(self, x, attn_mask=None):
# x [B, L, D]
attns = []
if self.conv_layers is not None:
for attn_layer, conv_layer in zip(self.attn_layers, self.conv_layers):
x, attn = attn_layer(x, attn_mask=attn_mask)
x = conv_layer(x)
attns.append(attn)
x, attn = self.attn_layers[-1](x)
attns.append(attn)
else:
for attn_layer in self.attn_layers:
x, attn = attn_layer(x, attn_mask=attn_mask)
attns.append(attn)
if self.norm is not None:
x = self.norm(x)
return x, attns
class DecoderLayer(nn.Module):
def __init__(self, self_attention, cross_attention, d_model, d_ff=None,
dropout=0.1, activation="relu"):
super(DecoderLayer, self).__init__()
d_ff = d_ff or 4 * d_model
self.self_attention = self_attention
self.cross_attention = cross_attention
self.conv1 = nn.Conv1d(in_channels=d_model, out_channels=d_ff, kernel_size=1)
self.conv2 = nn.Conv1d(in_channels=d_ff, out_channels=d_model, kernel_size=1)
self.norm1 = nn.LayerNorm(d_model)
self.norm2 = nn.LayerNorm(d_model)
self.norm3 = nn.LayerNorm(d_model)
self.dropout = nn.Dropout(dropout)
self.activation = F.relu if activation == "relu" else F.gelu
def forward(self, x, cross, x_mask=None, cross_mask=None):
x = x + self.dropout(self.self_attention(
x, x, x,
attn_mask=x_mask
)[0])
x = self.norm1(x)
x = x + self.dropout(self.cross_attention(
x, cross, cross,
attn_mask=cross_mask
)[0])
y = x = self.norm2(x)
y = self.dropout(self.activation(self.conv1(y.transpose(-1, 1))))
y = self.dropout(self.conv2(y).transpose(-1, 1))
return self.norm3(x + y)
class Decoder(nn.Module):
def __init__(self, layers, norm_layer=None, projection=None):
super(Decoder, self).__init__()
self.layers = nn.ModuleList(layers)
self.norm = norm_layer
self.projection = projection
def forward(self, x, cross, x_mask=None, cross_mask=None):
for layer in self.layers:
x = layer(x, cross, x_mask=x_mask, cross_mask=cross_mask)
if self.norm is not None:
x = self.norm(x)
if self.projection is not None:
x = self.projection(x)
return x
@@ -0,0 +1,121 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
from layers.Embed import DataEmbedding, DataEmbedding_wo_pos,DataEmbedding_wo_pos_temp,DataEmbedding_wo_temp
from layers.AutoCorrelation import AutoCorrelation, AutoCorrelationLayer
from layers.Autoformer_EncDec import Encoder, Decoder, EncoderLayer, DecoderLayer, my_Layernorm, series_decomp
import math
import numpy as np
class Model(nn.Module):
"""
Autoformer is the first method to achieve the series-wise connection,
with inherent O(LlogL) complexity
"""
def __init__(self, configs):
super(Model, self).__init__()
self.seq_len = configs.seq_len
self.label_len = configs.label_len
self.pred_len = configs.pred_len
self.output_attention = configs.output_attention
# Decomp
kernel_size = configs.moving_avg
self.decomp = series_decomp(kernel_size)
# Embedding
# The series-wise connection inherently contains the sequential information.
# Thus, we can discard the position embedding of transformers.
if configs.embed_type == 0:
self.enc_embedding = DataEmbedding_wo_pos(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_pos(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 1:
self.enc_embedding = DataEmbedding(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 2:
self.enc_embedding = DataEmbedding_wo_pos(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_pos(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 3:
self.enc_embedding = DataEmbedding_wo_temp(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_temp(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 4:
self.enc_embedding = DataEmbedding_wo_pos_temp(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_pos_temp(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
# Encoder
self.encoder = Encoder(
[
EncoderLayer(
AutoCorrelationLayer(
AutoCorrelation(False, configs.factor, attention_dropout=configs.dropout,
output_attention=configs.output_attention),
configs.d_model, configs.n_heads),
configs.d_model,
configs.d_ff,
moving_avg=configs.moving_avg,
dropout=configs.dropout,
activation=configs.activation
) for l in range(configs.e_layers)
],
norm_layer=my_Layernorm(configs.d_model)
)
# Decoder
self.decoder = Decoder(
[
DecoderLayer(
AutoCorrelationLayer(
AutoCorrelation(True, configs.factor, attention_dropout=configs.dropout,
output_attention=False),
configs.d_model, configs.n_heads),
AutoCorrelationLayer(
AutoCorrelation(False, configs.factor, attention_dropout=configs.dropout,
output_attention=False),
configs.d_model, configs.n_heads),
configs.d_model,
configs.c_out,
configs.d_ff,
moving_avg=configs.moving_avg,
dropout=configs.dropout,
activation=configs.activation,
)
for l in range(configs.d_layers)
],
norm_layer=my_Layernorm(configs.d_model),
projection=nn.Linear(configs.d_model, configs.c_out, bias=True)
)
def forward(self, x_enc, x_mark_enc, x_dec, x_mark_dec,
enc_self_mask=None, dec_self_mask=None, dec_enc_mask=None):
# decomp init
mean = torch.mean(x_enc, dim=1).unsqueeze(1).repeat(1, self.pred_len, 1)
zeros = torch.zeros([x_dec.shape[0], self.pred_len, x_dec.shape[2]], device=x_enc.device)
seasonal_init, trend_init = self.decomp(x_enc)
# decoder input
trend_init = torch.cat([trend_init[:, -self.label_len:, :], mean], dim=1)
seasonal_init = torch.cat([seasonal_init[:, -self.label_len:, :], zeros], dim=1)
# enc
enc_out = self.enc_embedding(x_enc, x_mark_enc)
enc_out, attns = self.encoder(enc_out, attn_mask=enc_self_mask)
# dec
dec_out = self.dec_embedding(seasonal_init, x_mark_dec)
seasonal_part, trend_part = self.decoder(dec_out, enc_out, x_mask=dec_self_mask, cross_mask=dec_enc_mask,
trend=trend_init)
# final
dec_out = trend_part + seasonal_part
if self.output_attention:
return dec_out[:, -self.pred_len:, :], attns
else:
return dec_out[:, -self.pred_len:, :] # [B, L, D]
@@ -0,0 +1,87 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
class moving_avg(nn.Module):
"""
Moving average block to highlight the trend of time series
"""
def __init__(self, kernel_size, stride):
super(moving_avg, self).__init__()
self.kernel_size = kernel_size
self.avg = nn.AvgPool1d(kernel_size=kernel_size, stride=stride, padding=0)
def forward(self, x):
# padding on the both ends of time series
front = x[:, 0:1, :].repeat(1, (self.kernel_size - 1) // 2, 1)
end = x[:, -1:, :].repeat(1, (self.kernel_size - 1) // 2, 1)
x = torch.cat([front, x, end], dim=1)
x = self.avg(x.permute(0, 2, 1))
x = x.permute(0, 2, 1)
return x
class series_decomp(nn.Module):
"""
Series decomposition block
"""
def __init__(self, kernel_size):
super(series_decomp, self).__init__()
self.moving_avg = moving_avg(kernel_size, stride=1)
def forward(self, x):
moving_mean = self.moving_avg(x)
res = x - moving_mean
return res, moving_mean
class Model(nn.Module):
"""
Decomposition-Linear
"""
def __init__(self, configs):
super(Model, self).__init__()
self.seq_len = configs.seq_len
self.pred_len = configs.pred_len
# Decompsition Kernel Size
kernel_size = 25
self.decompsition = series_decomp(kernel_size)
self.individual = configs.individual
self.channels = configs.enc_in
if self.individual:
self.Linear_Seasonal = nn.ModuleList()
self.Linear_Trend = nn.ModuleList()
for i in range(self.channels):
self.Linear_Seasonal.append(nn.Linear(self.seq_len,self.pred_len))
self.Linear_Trend.append(nn.Linear(self.seq_len,self.pred_len))
# Use this two lines if you want to visualize the weights
# self.Linear_Seasonal[i].weight = nn.Parameter((1/self.seq_len)*torch.ones([self.pred_len,self.seq_len]))
# self.Linear_Trend[i].weight = nn.Parameter((1/self.seq_len)*torch.ones([self.pred_len,self.seq_len]))
else:
self.Linear_Seasonal = nn.Linear(self.seq_len,self.pred_len)
self.Linear_Trend = nn.Linear(self.seq_len,self.pred_len)
# Use this two lines if you want to visualize the weights
# self.Linear_Seasonal.weight = nn.Parameter((1/self.seq_len)*torch.ones([self.pred_len,self.seq_len]))
# self.Linear_Trend.weight = nn.Parameter((1/self.seq_len)*torch.ones([self.pred_len,self.seq_len]))
def forward(self, x):
# x: [Batch, Input length, Channel]
seasonal_init, trend_init = self.decompsition(x)
seasonal_init, trend_init = seasonal_init.permute(0,2,1), trend_init.permute(0,2,1)
if self.individual:
seasonal_output = torch.zeros([seasonal_init.size(0),seasonal_init.size(1),self.pred_len],dtype=seasonal_init.dtype).to(seasonal_init.device)
trend_output = torch.zeros([trend_init.size(0),trend_init.size(1),self.pred_len],dtype=trend_init.dtype).to(trend_init.device)
for i in range(self.channels):
seasonal_output[:,i,:] = self.Linear_Seasonal[i](seasonal_init[:,i,:])
trend_output[:,i,:] = self.Linear_Trend[i](trend_init[:,i,:])
else:
seasonal_output = self.Linear_Seasonal(seasonal_init)
trend_output = self.Linear_Trend(trend_init)
x = seasonal_output + trend_output
return x.permute(0,2,1) # to [Batch, Output length, Channel]
@@ -0,0 +1,101 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
from utils.masking import TriangularCausalMask, ProbMask
from layers.Transformer_EncDec import Decoder, DecoderLayer, Encoder, EncoderLayer, ConvLayer
from layers.SelfAttention_Family import FullAttention, ProbAttention, AttentionLayer
from layers.Embed import DataEmbedding,DataEmbedding_wo_pos,DataEmbedding_wo_temp,DataEmbedding_wo_pos_temp
import numpy as np
class Model(nn.Module):
"""
Informer with Propspare attention in O(LlogL) complexity
"""
def __init__(self, configs):
super(Model, self).__init__()
self.pred_len = configs.pred_len
self.output_attention = configs.output_attention
# Embedding
if configs.embed_type == 0:
self.enc_embedding = DataEmbedding(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 1:
self.enc_embedding = DataEmbedding(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 2:
self.enc_embedding = DataEmbedding_wo_pos(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_pos(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 3:
self.enc_embedding = DataEmbedding_wo_temp(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_temp(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 4:
self.enc_embedding = DataEmbedding_wo_pos_temp(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_pos_temp(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
# Encoder
self.encoder = Encoder(
[
EncoderLayer(
AttentionLayer(
ProbAttention(False, configs.factor, attention_dropout=configs.dropout,
output_attention=configs.output_attention),
configs.d_model, configs.n_heads),
configs.d_model,
configs.d_ff,
dropout=configs.dropout,
activation=configs.activation
) for l in range(configs.e_layers)
],
[
ConvLayer(
configs.d_model
) for l in range(configs.e_layers - 1)
] if configs.distil else None,
norm_layer=torch.nn.LayerNorm(configs.d_model)
)
# Decoder
self.decoder = Decoder(
[
DecoderLayer(
AttentionLayer(
ProbAttention(True, configs.factor, attention_dropout=configs.dropout, output_attention=False),
configs.d_model, configs.n_heads),
AttentionLayer(
ProbAttention(False, configs.factor, attention_dropout=configs.dropout, output_attention=False),
configs.d_model, configs.n_heads),
configs.d_model,
configs.d_ff,
dropout=configs.dropout,
activation=configs.activation,
)
for l in range(configs.d_layers)
],
norm_layer=torch.nn.LayerNorm(configs.d_model),
projection=nn.Linear(configs.d_model, configs.c_out, bias=True)
)
def forward(self, x_enc, x_mark_enc, x_dec, x_mark_dec,
enc_self_mask=None, dec_self_mask=None, dec_enc_mask=None):
enc_out = self.enc_embedding(x_enc, x_mark_enc)
enc_out, attns = self.encoder(enc_out, attn_mask=enc_self_mask)
dec_out = self.dec_embedding(x_dec, x_mark_dec)
dec_out = self.decoder(dec_out, enc_out, x_mask=dec_self_mask, cross_mask=dec_enc_mask)
if self.output_attention:
return dec_out[:, -self.pred_len:, :], attns
else:
return dec_out[:, -self.pred_len:, :] # [B, L, D]
@@ -0,0 +1,21 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
class Model(nn.Module):
"""
Just one Linear layer
"""
def __init__(self, configs):
super(Model, self).__init__()
self.seq_len = configs.seq_len
self.pred_len = configs.pred_len
self.Linear = nn.Linear(self.seq_len, self.pred_len)
# Use this line if you want to visualize the weights
# self.Linear.weight = nn.Parameter((1/self.seq_len)*torch.ones([self.pred_len,self.seq_len]))
def forward(self, x):
# x: [Batch, Input length, Channel]
x = self.Linear(x.permute(0,2,1)).permute(0,2,1)
return x # [Batch, Output length, Channel]
@@ -0,0 +1,24 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
class Model(nn.Module):
"""
Normalization-Linear
"""
def __init__(self, configs):
super(Model, self).__init__()
self.seq_len = configs.seq_len
self.pred_len = configs.pred_len
self.Linear = nn.Linear(self.seq_len, self.pred_len)
# Use this line if you want to visualize the weights
# self.Linear.weight = nn.Parameter((1/self.seq_len)*torch.ones([self.pred_len,self.seq_len]))
def forward(self, x):
# x: [Batch, Input length, Channel]
seq_last = x[:,-1:,:].detach()
x = x - seq_last
x = self.Linear(x.permute(0,2,1)).permute(0,2,1)
x = x + seq_last
return x # [Batch, Output length, Channel]
@@ -0,0 +1,127 @@
__all__ = ['PatchTST']
# Cell
from typing import Callable, Optional
import torch
from torch import nn
from torch import Tensor
import torch.nn.functional as F
import numpy as np
from models.third_party.patch_tst.layers.PatchTST_backbone import PatchTST_backbone
from models.third_party.patch_tst.layers.PatchTST_layers import series_decomp
class Model(nn.Module):
def __init__(self, input_dim: int, output_dim: int, configs, max_seq_len: Optional[int] = 1024,
d_k: Optional[int] = None, d_v: Optional[int] = None,
norm: str = 'BatchNorm', attn_dropout: float = 0.,
act: str = "gelu", key_padding_mask: bool = 'auto', padding_var: Optional[int] = None,
attn_mask: Optional[Tensor] = None, res_attention: bool = True,
pre_norm: bool = False, store_attn: bool = False, pe: str = 'zeros', learn_pe: bool = True,
pretrain_head: bool = False, head_type='flatten', verbose: bool = False, **kwargs):
super().__init__()
# load parameters
c_in = input_dim
context_window = configs['seq_len']
target_window = configs['pred_len']
dec_out = output_dim
seq_pred = configs["seq_pred"]
n_layers = configs['e_layers']
n_heads = configs['n_heads']
d_model = configs['d_model']
d_ff = configs['d_ff']
dropout = configs['dropout']
fc_dropout = configs['fc_dropout']
head_dropout = configs['head_dropout']
individual = configs['individual']
patch_len = configs['patch_len']
stride = configs['stride']
padding_patch = configs['padding_patch']
revin = configs['revin']
affine = configs['affine']
subtract_last = configs['subtract_last']
decomposition = configs['decomposition']
kernel_size = configs['kernel_size']
# model
self.decomposition = decomposition
if self.decomposition:
self.decomp_module = series_decomp(kernel_size)
self.model_trend = PatchTST_backbone(c_in=c_in, context_window=context_window, target_window=target_window,
# extras
dec_out=dec_out,
seq_pred=seq_pred,
#
patch_len=patch_len, stride=stride,
max_seq_len=max_seq_len, n_layers=n_layers, d_model=d_model,
n_heads=n_heads, d_k=d_k, d_v=d_v, d_ff=d_ff, norm=norm,
attn_dropout=attn_dropout,
dropout=dropout, act=act, key_padding_mask=key_padding_mask,
padding_var=padding_var,
attn_mask=attn_mask, res_attention=res_attention, pre_norm=pre_norm,
store_attn=store_attn,
pe=pe, learn_pe=learn_pe, fc_dropout=fc_dropout,
head_dropout=head_dropout, padding_patch=padding_patch,
pretrain_head=pretrain_head, head_type=head_type,
individual=individual, revin=revin, affine=affine,
subtract_last=subtract_last, verbose=verbose, **kwargs)
self.model_res = PatchTST_backbone(c_in=c_in, context_window=context_window, target_window=target_window,
# extras
dec_out=dec_out,
seq_pred=seq_pred,
#
patch_len=patch_len, stride=stride,
max_seq_len=max_seq_len, n_layers=n_layers, d_model=d_model,
n_heads=n_heads, d_k=d_k, d_v=d_v, d_ff=d_ff, norm=norm,
attn_dropout=attn_dropout,
dropout=dropout, act=act, key_padding_mask=key_padding_mask,
padding_var=padding_var,
attn_mask=attn_mask, res_attention=res_attention, pre_norm=pre_norm,
store_attn=store_attn,
pe=pe, learn_pe=learn_pe, fc_dropout=fc_dropout,
head_dropout=head_dropout, padding_patch=padding_patch,
pretrain_head=pretrain_head, head_type=head_type, individual=individual,
revin=revin, affine=affine,
subtract_last=subtract_last, verbose=verbose, **kwargs)
else:
self.model = PatchTST_backbone(c_in=c_in, context_window=context_window, target_window=target_window,
# extras
dec_out=dec_out,
seq_pred=seq_pred,
#
patch_len=patch_len, stride=stride,
max_seq_len=max_seq_len, n_layers=n_layers, d_model=d_model,
n_heads=n_heads, d_k=d_k, d_v=d_v, d_ff=d_ff, norm=norm,
attn_dropout=attn_dropout,
dropout=dropout, act=act, key_padding_mask=key_padding_mask,
padding_var=padding_var,
attn_mask=attn_mask, res_attention=res_attention, pre_norm=pre_norm,
store_attn=store_attn,
pe=pe, learn_pe=learn_pe, fc_dropout=fc_dropout, head_dropout=head_dropout,
padding_patch=padding_patch,
pretrain_head=pretrain_head, head_type=head_type, individual=individual,
revin=revin, affine=affine,
subtract_last=subtract_last, verbose=verbose, **kwargs)
def forward(self, x): # x: [Batch, Input length, Channel]
if self.decomposition:
res_init, trend_init = self.decomp_module(x)
res_init, trend_init = res_init.permute(0, 2, 1), trend_init.permute(0, 2,
1) # x: [Batch, Channel, Input length]
res = self.model_res(res_init)
trend = self.model_trend(trend_init)
x = res + trend
x = x.permute(0, 2, 1) # x: [Batch, Input length, Channel]
else:
x = x.permute(0, 2, 1) # x: [Batch, Channel, Input length]
x = self.model(x)
x = x.permute(0, 2, 1) # x: [Batch, Input length, Channel]
return x
@@ -0,0 +1,120 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
from tqdm import tqdm
import pmdarima as pm
import threading
from sklearn.ensemble import GradientBoostingRegressor
class Naive_repeat(nn.Module):
def __init__(self, configs):
super(Naive_repeat, self).__init__()
self.pred_len = configs.pred_len
def forward(self, x):
B,L,D = x.shape
x = x[:,-1,:].reshape(B,1,D).repeat(self.pred_len,axis=1)
return x # [B, L, D]
class Naive_thread(threading.Thread):
def __init__(self,func,args=()):
super(Naive_thread,self).__init__()
self.func = func
self.args = args
def run(self):
self.results = self.func(*self.args)
def return_result(self):
threading.Thread.join(self)
return self.results
def _arima(seq,pred_len,bt,i):
model = pm.auto_arima(seq)
forecasts = model.predict(pred_len)
return forecasts,bt,i
class Arima(nn.Module):
"""
Extremely slow, please sample < 0.1
"""
def __init__(self, configs):
super(Arima, self).__init__()
self.pred_len = configs.pred_len
def forward(self, x):
result = np.zeros([x.shape[0],self.pred_len,x.shape[2]])
threads = []
for bt,seqs in tqdm(enumerate(x)):
for i in range(seqs.shape[-1]):
seq = seqs[:,i]
one_seq = Naive_thread(func=_arima,args=(seq,self.pred_len,bt,i))
threads.append(one_seq)
threads[-1].start()
for every_thread in tqdm(threads):
forcast,bt,i = every_thread.return_result()
result[bt,:,i] = forcast
return result # [B, L, D]
def _sarima(season,seq,pred_len,bt,i):
model = pm.auto_arima(seq, seasonal=True, m=season)
forecasts = model.predict(pred_len)
return forecasts,bt,i
class SArima(nn.Module):
"""
Extremely extremely slow, please sample < 0.01
"""
def __init__(self, configs):
super(SArima, self).__init__()
self.pred_len = configs.pred_len
self.seq_len = configs.seq_len
self.season = 24
if 'Ettm' in configs.data_path:
self.season = 12
elif 'ILI' in configs.data_path:
self.season = 1
if self.season >= self.seq_len:
self.season = 1
def forward(self, x):
result = np.zeros([x.shape[0],self.pred_len,x.shape[2]])
threads = []
for bt,seqs in tqdm(enumerate(x)):
for i in range(seqs.shape[-1]):
seq = seqs[:,i]
one_seq = Naive_thread(func=_sarima,args=(self.season,seq,self.pred_len,bt,i))
threads.append(one_seq)
threads[-1].start()
for every_thread in tqdm(threads):
forcast,bt,i = every_thread.return_result()
result[bt,:,i] = forcast
return result # [B, L, D]
def _gbrt(seq,seq_len,pred_len,bt,i):
model = GradientBoostingRegressor()
model.fit(np.arange(seq_len).reshape(-1,1),seq.reshape(-1,1))
forecasts = model.predict(np.arange(seq_len,seq_len+pred_len).reshape(-1,1))
return forecasts,bt,i
class GBRT(nn.Module):
def __init__(self, configs):
super(GBRT, self).__init__()
self.seq_len = configs.seq_len
self.pred_len = configs.pred_len
def forward(self, x):
result = np.zeros([x.shape[0],self.pred_len,x.shape[2]])
threads = []
for bt,seqs in tqdm(enumerate(x)):
for i in range(seqs.shape[-1]):
seq = seqs[:,i]
one_seq = Naive_thread(func=_gbrt,args=(seq,self.seq_len,self.pred_len,bt,i))
threads.append(one_seq)
threads[-1].start()
for every_thread in tqdm(threads):
forcast,bt,i = every_thread.return_result()
result[bt,:,i] = forcast
return result # [B, L, D]
@@ -0,0 +1,94 @@
import torch
import torch.nn as nn
import torch.nn.functional as F
from layers.Transformer_EncDec import Decoder, DecoderLayer, Encoder, EncoderLayer, ConvLayer
from layers.SelfAttention_Family import FullAttention, AttentionLayer
from layers.Embed import DataEmbedding,DataEmbedding_wo_pos,DataEmbedding_wo_temp,DataEmbedding_wo_pos_temp
import numpy as np
class Model(nn.Module):
"""
Vanilla Transformer with O(L^2) complexity
"""
def __init__(self, configs):
super(Model, self).__init__()
self.pred_len = configs.pred_len
self.output_attention = configs.output_attention
# Embedding
if configs.embed_type == 0:
self.enc_embedding = DataEmbedding(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 1:
self.enc_embedding = DataEmbedding(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 2:
self.enc_embedding = DataEmbedding_wo_pos(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_pos(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 3:
self.enc_embedding = DataEmbedding_wo_temp(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_temp(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
elif configs.embed_type == 4:
self.enc_embedding = DataEmbedding_wo_pos_temp(configs.enc_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
self.dec_embedding = DataEmbedding_wo_pos_temp(configs.dec_in, configs.d_model, configs.embed, configs.freq,
configs.dropout)
# Encoder
self.encoder = Encoder(
[
EncoderLayer(
AttentionLayer(
FullAttention(False, configs.factor, attention_dropout=configs.dropout,
output_attention=configs.output_attention), configs.d_model, configs.n_heads),
configs.d_model,
configs.d_ff,
dropout=configs.dropout,
activation=configs.activation
) for l in range(configs.e_layers)
],
norm_layer=torch.nn.LayerNorm(configs.d_model)
)
# Decoder
self.decoder = Decoder(
[
DecoderLayer(
AttentionLayer(
FullAttention(True, configs.factor, attention_dropout=configs.dropout, output_attention=False),
configs.d_model, configs.n_heads),
AttentionLayer(
FullAttention(False, configs.factor, attention_dropout=configs.dropout, output_attention=False),
configs.d_model, configs.n_heads),
configs.d_model,
configs.d_ff,
dropout=configs.dropout,
activation=configs.activation,
)
for l in range(configs.d_layers)
],
norm_layer=torch.nn.LayerNorm(configs.d_model),
projection=nn.Linear(configs.d_model, configs.c_out, bias=True)
)
def forward(self, x_enc, x_mark_enc, x_dec, x_mark_dec,
enc_self_mask=None, dec_self_mask=None, dec_enc_mask=None):
enc_out = self.enc_embedding(x_enc, x_mark_enc)
enc_out, attns = self.encoder(enc_out, attn_mask=enc_self_mask)
dec_out = self.dec_embedding(x_dec, x_mark_dec)
dec_out = self.decoder(dec_out, enc_out, x_mask=dec_self_mask, cross_mask=dec_enc_mask)
if self.output_attention:
return dec_out[:, -self.pred_len:, :], attns
else:
return dec_out[:, -self.pred_len:, :] # [B, L, D]
Submodule code/new_realtime/models/third_party/patch_tst_raw added at 204c21efe0
+201
View File
@@ -0,0 +1,201 @@
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
and distribution as defined by Sections 1 through 9 of this document.
"Licensor" shall mean the copyright owner or entity authorized by
the copyright owner that is granting the License.
"Legal Entity" shall mean the union of the acting entity and all
other entities that control, are controlled by, or are under common
control with that entity. For the purposes of this definition,
"control" means (i) the power, direct or indirect, to cause the
direction or management of such entity, whether by contract or
otherwise, or (ii) ownership of fifty percent (50%) or more of the
outstanding shares, or (iii) beneficial ownership of such entity.
"You" (or "Your") shall mean an individual or Legal Entity
exercising permissions granted by this License.
"Source" form shall mean the preferred form for making modifications,
including but not limited to software source code, documentation
source, and configuration files.
"Object" form shall mean any form resulting from mechanical
transformation or translation of a Source form, including but
not limited to compiled object code, generated documentation,
and conversions to other media types.
"Work" shall mean the work of authorship, whether in Source or
Object form, made available under the License, as indicated by a
copyright notice that is included in or attached to the work
(an example is provided in the Appendix below).
"Derivative Works" shall mean any work, whether in Source or Object
form, that is based on (or derived from) the Work and for which the
editorial revisions, annotations, elaborations, or other modifications
represent, as a whole, an original work of authorship. For the purposes
of this License, Derivative Works shall not include works that remain
separable from, or merely link (or bind by name) to the interfaces of,
the Work and Derivative Works thereof.
"Contribution" shall mean any work of authorship, including
the original version of the Work and any modifications or additions
to that Work or Derivative Works thereof, that is intentionally
submitted to Licensor for inclusion in the Work by the copyright owner
or by an individual or Legal Entity authorized to submit on behalf of
the copyright owner. For the purposes of this definition, "submitted"
means any form of electronic, verbal, or written communication sent
to the Licensor or its representatives, including but not limited to
communication on electronic mailing lists, source code control systems,
and issue tracking systems that are managed by, or on behalf of, the
Licensor for the purpose of discussing and improving the Work, but
excluding communication that is conspicuously marked or otherwise
designated in writing by the copyright owner as "Not a Contribution."
"Contributor" shall mean Licensor and any individual or Legal Entity
on behalf of whom a Contribution has been received by Licensor and
subsequently incorporated within the Work.
2. Grant of Copyright License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
copyright license to reproduce, prepare Derivative Works of,
publicly display, publicly perform, sublicense, and distribute the
Work and such Derivative Works in Source or Object form.
3. Grant of Patent License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
(except as stated in this section) patent license to make, have made,
use, offer to sell, sell, import, and otherwise transfer the Work,
where such license applies only to those patent claims licensable
by such Contributor that are necessarily infringed by their
Contribution(s) alone or by combination of their Contribution(s)
with the Work to which such Contribution(s) was submitted. If You
institute patent litigation against any entity (including a
cross-claim or counterclaim in a lawsuit) alleging that the Work
or a Contribution incorporated within the Work constitutes direct
or contributory patent infringement, then any patent licenses
granted to You under this License for that Work shall terminate
as of the date such litigation is filed.
4. Redistribution. You may reproduce and distribute copies of the
Work or Derivative Works thereof in any medium, with or without
modifications, and in Source or Object form, provided that You
meet the following conditions:
(a) You must give any other recipients of the Work or
Derivative Works a copy of this License; and
(b) You must cause any modified files to carry prominent notices
stating that You changed the files; and
(c) You must retain, in the Source form of any Derivative Works
that You distribute, all copyright, patent, trademark, and
attribution notices from the Source form of the Work,
excluding those notices that do not pertain to any part of
the Derivative Works; and
(d) If the Work includes a "NOTICE" text file as part of its
distribution, then any Derivative Works that You distribute must
include a readable copy of the attribution notices contained
within such NOTICE file, excluding those notices that do not
pertain to any part of the Derivative Works, in at least one
of the following places: within a NOTICE text file distributed
as part of the Derivative Works; within the Source form or
documentation, if provided along with the Derivative Works; or,
within a display generated by the Derivative Works, if and
wherever such third-party notices normally appear. The contents
of the NOTICE file are for informational purposes only and
do not modify the License. You may add Your own attribution
notices within Derivative Works that You distribute, alongside
or as an addendum to the NOTICE text from the Work, provided
that such additional attribution notices cannot be construed
as modifying the License.
You may add Your own copyright statement to Your modifications and
may provide additional or different license terms and conditions
for use, reproduction, or distribution of Your modifications, or
for any such Derivative Works as a whole, provided Your use,
reproduction, and distribution of the Work otherwise complies with
the conditions stated in this License.
5. Submission of Contributions. Unless You explicitly state otherwise,
any Contribution intentionally submitted for inclusion in the Work
by You to the Licensor shall be under the terms and conditions of
this License, without any additional terms or conditions.
Notwithstanding the above, nothing herein shall supersede or modify
the terms of any separate license agreement you may have executed
with Licensor regarding such Contributions.
6. Trademarks. This License does not grant permission to use the trade
names, trademarks, service marks, or product names of the Licensor,
except as required for reasonable and customary use in describing the
origin of the Work and reproducing the content of the NOTICE file.
7. Disclaimer of Warranty. Unless required by applicable law or
agreed to in writing, Licensor provides the Work (and each
Contributor provides its Contributions) on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
implied, including, without limitation, any warranties or conditions
of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
PARTICULAR PURPOSE. You are solely responsible for determining the
appropriateness of using or redistributing the Work and assume any
risks associated with Your exercise of permissions under this License.
8. Limitation of Liability. In no event and under no legal theory,
whether in tort (including negligence), contract, or otherwise,
unless required by applicable law (such as deliberate and grossly
negligent acts) or agreed to in writing, shall any Contributor be
liable to You for damages, including any direct, indirect, special,
incidental, or consequential damages of any character arising as a
result of this License or out of the use or inability to use the
Work (including but not limited to damages for loss of goodwill,
work stoppage, computer failure or malfunction, or any and all
other commercial damages or losses), even if such Contributor
has been advised of the possibility of such damages.
9. Accepting Warranty or Additional Liability. While redistributing
the Work or Derivative Works thereof, You may choose to offer,
and charge a fee for, acceptance of support, warranty, indemnity,
or other liability obligations and/or rights consistent with this
License. However, in accepting such obligations, You may act only
on Your own behalf and on Your sole responsibility, not on behalf
of any other Contributor, and only if You agree to indemnify,
defend, and hold each Contributor harmless for any liability
incurred by, or claims asserted against, such Contributor by reason
of your accepting any such warranty or additional liability.
END OF TERMS AND CONDITIONS
APPENDIX: How to apply the Apache License to your work.
To apply the Apache License to your work, attach the following
boilerplate notice, with the fields enclosed by brackets "[]"
replaced with your own identifying information. (Don't include
the brackets!) The text should be enclosed in the appropriate
comment syntax for the file format. We also recommend that a
file or class name and description of purpose be included on the
same "printed page" as the copyright notice for easier
identification within third-party archives.
Copyright 2021-2022 NVIDIA Corporation
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
+5
View File
@@ -0,0 +1,5 @@
TFT for PyTorch
This repository includes software from https://github.com/google-research/google-research/tree/master/tft licensed under the Apache 2.0 License.
This repository contains code from https://github.com/rwightman/pytorch-image-models/blob/master/timm/utils/model_ema.py under the Apache 2.0 License.
+3
View File
@@ -0,0 +1,3 @@
This folder contains code copied from NVIDIA's Temporal Fusion Transformer implementation, licensed under Apache 2.0.
All rights belong to NVIDIA Corporation.
Modifications are noted in the file headers.
+525
View File
@@ -0,0 +1,525 @@
# Copyright (c) 2021-2022, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Modified by Alexander Blank, 2025.
# Modifications:
# - added support for multiple outputs
# - added support for mode configurable targets
# - added support for single dimension, non-quantile outputs
# - added support for target agnostic predictions, for cases, where the target does not become known after prediction
import os
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch import Tensor
from torch.nn.parameter import UninitializedParameter
from typing import Dict, Tuple, Optional, List
MAKE_CONVERT_COMPATIBLE = os.environ.get("TFT_SCRIPTING", None) is not None
from torch.nn import LayerNorm
class MaybeLayerNorm(nn.Module):
def __init__(self, output_size, hidden_size, eps):
super().__init__()
if output_size and output_size == 1:
self.ln = nn.Identity()
else:
self.ln = LayerNorm(output_size if output_size else hidden_size, eps=eps)
def forward(self, x):
return self.ln(x)
class GLU(nn.Module):
def __init__(self, hidden_size, output_size):
super().__init__()
self.lin = nn.Linear(hidden_size, output_size * 2)
def forward(self, x: Tensor) -> Tensor:
x = self.lin(x)
x = F.glu(x)
return x
class GRN(nn.Module):
def __init__(self,
input_size,
hidden_size,
output_size=None,
context_hidden_size=None,
dropout=0.0, ):
super().__init__()
self.layer_norm = MaybeLayerNorm(output_size, hidden_size, eps=1e-3)
self.lin_a = nn.Linear(input_size, hidden_size)
if context_hidden_size is not None:
self.lin_c = nn.Linear(context_hidden_size, hidden_size, bias=False)
else:
self.lin_c = nn.Identity()
self.lin_i = nn.Linear(hidden_size, hidden_size)
self.glu = GLU(hidden_size, output_size if output_size else hidden_size)
self.dropout = nn.Dropout(dropout)
self.out_proj = nn.Linear(input_size, output_size) if output_size else None
def forward(self, a: Tensor, c: Optional[Tensor] = None):
x = self.lin_a(a)
if c is not None:
x = x + self.lin_c(c).unsqueeze(1)
x = F.elu(x)
x = self.lin_i(x)
x = self.dropout(x)
x = self.glu(x)
y = a if self.out_proj is None else self.out_proj(a)
x = x + y
return self.layer_norm(x)
# @torch.jit.script #Currently broken with autocast
def fused_pointwise_linear_v1(x, a, b):
out = torch.mul(x.unsqueeze(-1), a)
out = out + b
return out
@torch.jit.script
def fused_pointwise_linear_v2(x, a, b):
out = x.unsqueeze(3) * a
out = out + b
return out
class TFTEmbedding(nn.Module):
def __init__(self, config, initialize_cont_params=True):
# initialize_cont_params=False prevents form initializing parameters inside this class
# so they can be lazily initialized in LazyEmbedding module
super().__init__()
self.s_cat_inp_lens = config.static_categorical_inp_lens
self.t_cat_k_inp_lens = config.temporal_known_categorical_inp_lens
self.t_cat_o_inp_lens = config.temporal_observed_categorical_inp_lens
self.s_cont_inp_size = config.static_continuous_inp_size
self.t_cont_k_inp_size = config.temporal_known_continuous_inp_size
self.t_cont_o_inp_size = config.temporal_observed_continuous_inp_size
self.t_tgt_size = config.temporal_target_size
self.hidden_size = config.hidden_size
# There are 7 types of input:
# 1. Static categorical
# 2. Static continuous
# 3. Temporal known a priori categorical
# 4. Temporal known a priori continuous
# 5. Temporal observed categorical
# 6. Temporal observed continuous
# 7. Temporal observed targets (time series obseved so far)
self.s_cat_embed = nn.ModuleList([
nn.Embedding(n, self.hidden_size) for n in self.s_cat_inp_lens]) if self.s_cat_inp_lens else None
self.t_cat_k_embed = nn.ModuleList([
nn.Embedding(n, self.hidden_size) for n in self.t_cat_k_inp_lens]) if self.t_cat_k_inp_lens else None
self.t_cat_o_embed = nn.ModuleList([
nn.Embedding(n, self.hidden_size) for n in self.t_cat_o_inp_lens]) if self.t_cat_o_inp_lens else None
if initialize_cont_params:
self.s_cont_embedding_vectors = nn.Parameter(
torch.Tensor(self.s_cont_inp_size, self.hidden_size)) if self.s_cont_inp_size else None
self.t_cont_k_embedding_vectors = nn.Parameter(
torch.Tensor(self.t_cont_k_inp_size, self.hidden_size)) if self.t_cont_k_inp_size else None
self.t_cont_o_embedding_vectors = nn.Parameter(
torch.Tensor(self.t_cont_o_inp_size, self.hidden_size)) if self.t_cont_o_inp_size else None
self.t_tgt_embedding_vectors = nn.Parameter(torch.Tensor(self.t_tgt_size, self.hidden_size))
self.s_cont_embedding_bias = nn.Parameter(
torch.zeros(self.s_cont_inp_size, self.hidden_size)) if self.s_cont_inp_size else None
self.t_cont_k_embedding_bias = nn.Parameter(
torch.zeros(self.t_cont_k_inp_size, self.hidden_size)) if self.t_cont_k_inp_size else None
self.t_cont_o_embedding_bias = nn.Parameter(
torch.zeros(self.t_cont_o_inp_size, self.hidden_size)) if self.t_cont_o_inp_size else None
self.t_tgt_embedding_bias = nn.Parameter(torch.zeros(self.t_tgt_size, self.hidden_size))
self.reset_parameters()
def reset_parameters(self):
if self.s_cont_embedding_vectors is not None:
torch.nn.init.xavier_normal_(self.s_cont_embedding_vectors)
torch.nn.init.zeros_(self.s_cont_embedding_bias)
if self.t_cont_k_embedding_vectors is not None:
torch.nn.init.xavier_normal_(self.t_cont_k_embedding_vectors)
torch.nn.init.zeros_(self.t_cont_k_embedding_bias)
if self.t_cont_o_embedding_vectors is not None:
torch.nn.init.xavier_normal_(self.t_cont_o_embedding_vectors)
torch.nn.init.zeros_(self.t_cont_o_embedding_bias)
if self.t_tgt_embedding_vectors is not None:
torch.nn.init.xavier_normal_(self.t_tgt_embedding_vectors)
torch.nn.init.zeros_(self.t_tgt_embedding_bias)
if self.s_cat_embed is not None:
for module in self.s_cat_embed:
module.reset_parameters()
if self.t_cat_k_embed is not None:
for module in self.t_cat_k_embed:
module.reset_parameters()
if self.t_cat_o_embed is not None:
for module in self.t_cat_o_embed:
module.reset_parameters()
def _apply_embedding(self,
cat: Optional[Tensor],
cont: Optional[Tensor],
cat_emb: Optional[nn.ModuleList],
cont_emb: Tensor,
cont_bias: Tensor,
) -> Tuple[Optional[Tensor], Optional[Tensor]]:
e_cat = torch.stack([embed(cat[..., i]) for i, embed in enumerate(cat_emb)],
dim=-2) if cat is not None else None
if cont is not None:
# the line below is equivalent to following einsums
# e_cont = torch.einsum('btf,fh->bthf', cont, cont_emb)
# e_cont = torch.einsum('bf,fh->bhf', cont, cont_emb)
if MAKE_CONVERT_COMPATIBLE:
e_cont = torch.mul(cont.unsqueeze(-1), cont_emb)
e_cont = e_cont + cont_bias
else:
e_cont = fused_pointwise_linear_v1(cont, cont_emb, cont_bias)
else:
e_cont = None
if e_cat is not None and e_cont is not None:
return torch.cat([e_cat, e_cont], dim=-2)
elif e_cat is not None:
return e_cat
elif e_cont is not None:
return e_cont
else:
return None
def forward(self, x: Dict[str, Tensor], use_target: bool = False):
# Extract inputs
s_cat_inp = x.get('s_cat', None)
s_cont_inp = x.get('s_cont', None)
t_cat_k_inp = x.get('k_cat', None)
t_cont_k_inp = x.get('k_cont', None)
t_cat_o_inp = x.get('o_cat', None)
t_cont_o_inp = x.get('o_cont', None)
# Only use target if teacher forcing is enabled.
# When disabled, we ignore target values.
if use_target:
t_tgt_obs = x['target'] # Must be present when using teacher forcing
else:
t_tgt_obs = None
# For static inputs, take the first timestep
s_cat_inp = s_cat_inp[:, 0, :] if s_cat_inp is not None else None
s_cont_inp = s_cont_inp[:, 0, :] if s_cont_inp is not None else None
# Apply embeddings for static and known/observed temporal features
s_inp = self._apply_embedding(s_cat_inp,
s_cont_inp,
self.s_cat_embed,
self.s_cont_embedding_vectors,
self.s_cont_embedding_bias)
t_known_inp = self._apply_embedding(t_cat_k_inp,
t_cont_k_inp,
self.t_cat_k_embed,
self.t_cont_k_embedding_vectors,
self.t_cont_k_embedding_bias)
t_observed_inp = self._apply_embedding(t_cat_o_inp,
t_cont_o_inp,
self.t_cat_o_embed,
self.t_cont_o_embedding_vectors,
self.t_cont_o_embedding_bias)
# Compute the target embedding only if teacher forcing is enabled.
if use_target and t_tgt_obs is not None:
if MAKE_CONVERT_COMPATIBLE:
t_observed_tgt = torch.matmul(t_tgt_obs.unsqueeze(3).unsqueeze(4),
self.t_tgt_embedding_vectors.unsqueeze(1)).squeeze(3)
t_observed_tgt = t_observed_tgt + self.t_tgt_embedding_bias
else:
t_observed_tgt = fused_pointwise_linear_v2(t_tgt_obs,
self.t_tgt_embedding_vectors,
self.t_tgt_embedding_bias)
else:
t_observed_tgt = None
return s_inp, t_known_inp, t_observed_inp, t_observed_tgt
class LazyEmbedding(nn.modules.lazy.LazyModuleMixin, TFTEmbedding):
cls_to_become = TFTEmbedding
def __init__(self, config):
super().__init__(config, initialize_cont_params=False)
if config.static_continuous_inp_size:
self.s_cont_embedding_vectors = UninitializedParameter()
self.s_cont_embedding_bias = UninitializedParameter()
else:
self.s_cont_embedding_vectors = None
self.s_cont_embedding_bias = None
if config.temporal_known_continuous_inp_size:
self.t_cont_k_embedding_vectors = UninitializedParameter()
self.t_cont_k_embedding_bias = UninitializedParameter()
else:
self.t_cont_k_embedding_vectors = None
self.t_cont_k_embedding_bias = None
if config.temporal_observed_continuous_inp_size:
self.t_cont_o_embedding_vectors = UninitializedParameter()
self.t_cont_o_embedding_bias = UninitializedParameter()
else:
self.t_cont_o_embedding_vectors = None
self.t_cont_o_embedding_bias = None
self.t_tgt_embedding_vectors = UninitializedParameter()
self.t_tgt_embedding_bias = UninitializedParameter()
def initialize_parameters(self, x):
if self.has_uninitialized_params():
s_cont_inp = x.get('s_cont', None)
t_cont_k_inp = x.get('k_cont', None)
t_cont_o_inp = x.get('o_cont', None)
t_tgt_obs = x['target'] # Has to be present
if s_cont_inp is not None:
self.s_cont_embedding_vectors.materialize((s_cont_inp.shape[-1], self.hidden_size))
self.s_cont_embedding_bias.materialize((s_cont_inp.shape[-1], self.hidden_size))
if t_cont_k_inp is not None:
self.t_cont_k_embedding_vectors.materialize((t_cont_k_inp.shape[-1], self.hidden_size))
self.t_cont_k_embedding_bias.materialize((t_cont_k_inp.shape[-1], self.hidden_size))
if t_cont_o_inp is not None:
self.t_cont_o_embedding_vectors.materialize((t_cont_o_inp.shape[-1], self.hidden_size))
self.t_cont_o_embedding_bias.materialize((t_cont_o_inp.shape[-1], self.hidden_size))
self.t_tgt_embedding_vectors.materialize((t_tgt_obs.shape[-1], self.hidden_size))
self.t_tgt_embedding_bias.materialize((t_tgt_obs.shape[-1], self.hidden_size))
self.reset_parameters()
# def forward(self, x: Dict[str, Tensor], use_target: bool = True):
# return super().forward(x, use_target=use_target)
class VariableSelectionNetwork(nn.Module):
def __init__(self, config, num_inputs):
super().__init__()
self.joint_grn = GRN(config.hidden_size * num_inputs, config.hidden_size, output_size=num_inputs,
context_hidden_size=config.hidden_size)
self.var_grns = nn.ModuleList(
[GRN(config.hidden_size, config.hidden_size, dropout=config.dropout) for _ in range(num_inputs)])
def forward(self, x: Tensor, context: Optional[Tensor] = None):
Xi = torch.flatten(x, start_dim=-2)
grn_outputs = self.joint_grn(Xi, c=context)
sparse_weights = F.softmax(grn_outputs, dim=-1)
transformed_embed_list = [m(x[..., i, :]) for i, m in enumerate(self.var_grns)]
transformed_embed = torch.stack(transformed_embed_list, dim=-1)
# the line below performs batched matrix vector multiplication
# for temporal features it's bthf,btf->bth
# for static features it's bhf,bf->bh
variable_ctx = torch.matmul(transformed_embed, sparse_weights.unsqueeze(-1)).squeeze(-1)
return variable_ctx, sparse_weights
class StaticCovariateEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.vsn = VariableSelectionNetwork(config, config.num_static_vars)
self.context_grns = nn.ModuleList(
[GRN(config.hidden_size, config.hidden_size, dropout=config.dropout) for _ in range(4)])
def forward(self, x: Tensor) -> Tuple[Tensor, Tensor, Tensor, Tensor]:
variable_ctx, sparse_weights = self.vsn(x)
# Context vectors:
# variable selection context
# enrichment context
# state_c context
# state_h context
cs, ce, ch, cc = [m(variable_ctx) for m in self.context_grns]
return cs, ce, ch, cc
class InterpretableMultiHeadAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.n_head = config.n_head
assert config.hidden_size % config.n_head == 0
self.d_head = config.hidden_size // config.n_head
self.qkv_linears = nn.Linear(config.hidden_size, (2 * self.n_head + 1) * self.d_head, bias=False)
self.out_proj = nn.Linear(self.d_head, config.hidden_size, bias=False)
self.attn_dropout = nn.Dropout(config.attn_dropout)
self.out_dropout = nn.Dropout(config.dropout)
self.scale = self.d_head ** -0.5
self.register_buffer("_mask",
torch.triu(torch.full((config.example_length, config.example_length), float('-inf')),
1).unsqueeze(0))
def forward(self, x: Tensor) -> Tuple[Tensor, Tensor]:
bs, t, h_size = x.shape
qkv = self.qkv_linears(x)
q, k, v = qkv.split((self.n_head * self.d_head, self.n_head * self.d_head, self.d_head), dim=-1)
q = q.view(bs, t, self.n_head, self.d_head)
k = k.view(bs, t, self.n_head, self.d_head)
v = v.view(bs, t, self.d_head)
# attn_score = torch.einsum('bind,bjnd->bnij', q, k)
attn_score = torch.matmul(q.permute((0, 2, 1, 3)), k.permute((0, 2, 3, 1)))
attn_score.mul_(self.scale)
attn_score = attn_score + self._mask
attn_prob = F.softmax(attn_score, dim=3)
attn_prob = self.attn_dropout(attn_prob)
# attn_vec = torch.einsum('bnij,bjd->bnid', attn_prob, v)
attn_vec = torch.matmul(attn_prob, v.unsqueeze(1))
m_attn_vec = torch.mean(attn_vec, dim=1)
out = self.out_proj(m_attn_vec)
out = self.out_dropout(out)
return out, attn_prob
class TFTBack(nn.Module):
def __init__(self, config):
super().__init__()
self.encoder_length = config.encoder_length
self.history_vsn = VariableSelectionNetwork(config, config.num_historic_vars)
self.history_encoder = nn.LSTM(config.hidden_size, config.hidden_size, batch_first=True)
self.future_vsn = VariableSelectionNetwork(config, config.num_future_vars)
self.future_encoder = nn.LSTM(config.hidden_size, config.hidden_size, batch_first=True)
self.input_gate = GLU(config.hidden_size, config.hidden_size)
self.input_gate_ln = LayerNorm(config.hidden_size, eps=1e-3)
self.enrichment_grn = GRN(config.hidden_size,
config.hidden_size,
context_hidden_size=config.hidden_size,
dropout=config.dropout)
self.attention = InterpretableMultiHeadAttention(config)
self.attention_gate = GLU(config.hidden_size, config.hidden_size)
self.attention_ln = LayerNorm(config.hidden_size, eps=1e-3)
self.positionwise_grn = GRN(config.hidden_size,
config.hidden_size,
dropout=config.dropout)
self.decoder_gate = GLU(config.hidden_size, config.hidden_size)
self.decoder_ln = LayerNorm(config.hidden_size, eps=1e-3)
self.quantiles = config.quantiles
self.target_size = config.target_size
if self.quantiles is not None:
self.output = nn.Linear(config.hidden_size, len(config.quantiles) * config.target_size)
else:
self.output = nn.Linear(config.hidden_size, config.target_size)
def forward(self, historical_inputs, cs, ch, cc, ce, future_inputs):
historical_features, _ = self.history_vsn(historical_inputs, cs)
history, state = self.history_encoder(historical_features, (ch, cc))
future_features, _ = self.future_vsn(future_inputs, cs)
future, _ = self.future_encoder(future_features, state)
torch.cuda.synchronize()
# skip connection
input_embedding = torch.cat([historical_features, future_features], dim=1)
temporal_features = torch.cat([history, future], dim=1)
temporal_features = self.input_gate(temporal_features)
temporal_features = temporal_features + input_embedding
temporal_features = self.input_gate_ln(temporal_features)
# Static enrichment
enriched = self.enrichment_grn(temporal_features, c=ce)
# Temporal self attention
x, _ = self.attention(enriched)
# Don't compute hictorical quantiles
x = x[:, self.encoder_length:, :]
temporal_features = temporal_features[:, self.encoder_length:, :]
enriched = enriched[:, self.encoder_length:, :]
x = self.attention_gate(x)
x = x + enriched
x = self.attention_ln(x)
# Position-wise feed-forward
x = self.positionwise_grn(x)
# Final skip connection
x = self.decoder_gate(x)
x = x + temporal_features
x = self.decoder_ln(x)
out = self.output(x)
if self.quantiles is not None:
# Reshape to [batch, time, target_size, n_quantiles]
out = out.view(out.size(0), out.size(1), self.target_size, len(self.quantiles))
else:
# Reshape to [batch, time, target_size]
out = out.view(out.size(0), out.size(1), self.target_size)
return out
class TemporalFusionTransformer(nn.Module):
"""
Implementation of https://arxiv.org/abs/1912.09363
"""
def __init__(self, config):
super().__init__()
if hasattr(config, 'model'):
config = config.model
self.encoder_length = config.encoder_length # this determines from how distant past we want to use data from
# self.embedding = LazyEmbedding(config)
self.embedding = TFTEmbedding(config)
self.static_encoder = StaticCovariateEncoder(config)
# if MAKE_CONVERT_COMPATIBLE:
self.TFTpart2 = TFTBack(config)
# else:
# self.TFTpart2 = torch.jit.script(TFTBack(config))
def forward(self, x: Dict[str, Tensor]) -> Tensor:
# Call embedding with use_target=False to skip target features entirely.
s_inp, t_known_inp, t_observed_inp, t_observed_tgt = self.embedding(x, use_target=False)
# Compute static context
cs, ce, ch, cc = self.static_encoder(s_inp)
ch, cc = ch.unsqueeze(0), cc.unsqueeze(0) # Initialize LSTM states
# Build historical inputs without teacher-forced targets.
# Include observed features if available, and the known inputs.
historical_inputs = []
if t_observed_inp is not None:
historical_inputs.append(t_observed_inp[:, :self.encoder_length, :])
historical_inputs.append(t_known_inp[:, :self.encoder_length, :])
historical_inputs = torch.cat(historical_inputs, dim=-2)
# Future inputs remain the same
future_inputs = t_known_inp[:, self.encoder_length:]
return self.TFTpart2(historical_inputs, cs, ch, cc, ce, future_inputs)
+40
View File
@@ -0,0 +1,40 @@
import math
import torch
from torch import nn
class TransformerModel(nn.Module):
def __init__(self, input_dim: int,
output_dim: int,
seq_len: int,
embed_dim: int,
num_heads: int,
num_enc_layers: int):
super().__init__()
self.input_proj = nn.Linear(input_dim, embed_dim)
# Compute positional embedding ONCE at init
pe = self._get_sinusoidal_embedding(seq_len, embed_dim) # (seq_len, embed_dim)
self.register_buffer('pos_embed', pe.unsqueeze(0)) # (1, seq_len, embed_dim)
encoder_layer = nn.TransformerEncoderLayer(embed_dim, num_heads)
self.encoder = nn.TransformerEncoder(encoder_layer, num_enc_layers)
self.pool = nn.AdaptiveAvgPool1d(1)
self.head = nn.Linear(embed_dim, output_dim)
def _get_sinusoidal_embedding(self, seq_len, embed_dim):
position = torch.arange(0, seq_len).unsqueeze(1)
div_term = torch.exp(torch.arange(0, embed_dim, 2) * -(math.log(10000.0) / embed_dim))
pe = torch.zeros(seq_len, embed_dim)
pe[:, 0::2] = torch.sin(position * div_term)
pe[:, 1::2] = torch.cos(position * div_term)
return pe # (seq_len, embed_dim)
def forward(self, x):
# x: (B, seq_len, input_dim)
x = self.input_proj(x) + self.pos_embed[:, :x.size(1), :] # broadcasting
x = x.permute(1, 0, 2) # (S, B, E)
enc = self.encoder(x) # (S, B, E)
pooled = enc.mean(0) # (B, E)
return self.head(pooled)
+137
View File
@@ -0,0 +1,137 @@
import os
from typing import Callable
import math
import numpy as np
from bson import ObjectId
import torch
from torch import nn
from utils.data_utils import get_collated_batch_for_key
def simple_get_y(collated_batch):
"""
Get y from collated batch
Args:
collated_batch: collated batch to get y from
Returns:
np.ndarray: y
"""
return collated_batch[1]
def simple_model_save(model: nn.Module,
training_configuration: dict) -> None:
"""
Save model to disk
Args:
model: model to save
training_configuration: training configuration
Returns:
None
"""
model_path = os.path.join(training_configuration["training_dir"], "model.pt")
torch.save(model.state_dict(), model_path)
def simple_model_load(model_configuration: dict,
training_configuration: dict,
sample_key: str | ObjectId,
device: str,
model_creation_fn: Callable,
*args, **kwargs) -> nn.Module:
"""
Load model from disk
Args:
model_configuration: model configuration
training_configuration: training configuration
sample_key: sample key to get sample data batch with
device: device to load model on
model_creation_fn: function to create model
Returns:
model: loaded model
"""
training_dir = training_configuration["training_dir"]
model_state_path = os.path.join(training_dir, "model.pt")
model = model_creation_fn(model_configuration,
sample_key, *args, **kwargs)
model.to(device)
model.load_state_dict(torch.load(model_state_path))
return model
def simple_model_creation(model_configuration: dict,
sample_key: str | ObjectId,
lmdb_env=None) -> nn.Module:
"""
Create model from configuration
Args:
model_configuration: model configuration
sample_key: sample key to get sample data batch with
lmdb_env: LMDB environment to use for getting sample data batch
Returns:
model: created model
"""
sample_item = get_collated_batch_for_key(sample_key, model_configuration, lmdb_env=lmdb_env)
input_size = sample_item[0].shape[2]
output_size = sample_item[1].shape[2]
model_class = model_configuration["model_class"]
cnn_model = model_class(input_dim=input_size,
output_dim=output_size,
**model_configuration["model_parameters"], )
return cnn_model
def simple_x_y_predict(model: nn.Module,
collated_batch: tuple[torch.Tensor, torch.Tensor],
device: str,
batch_size: int,
*args, **kwargs) -> torch.Tensor:
"""
Predict y from x
Args:
model: model to use for prediction, must have 'predict' method
collated_batch: collated data batch to predict with,
must be a tuple of (x, y) where x is the input data and y is the target data
device: device to use for prediction
*args: additional arguments to pass to the model's predict method
**kwargs: additional keyword arguments to pass to the model's predict method
Returns:
torch.Tensor: predicted y as numpy array on CPU
"""
model.eval()
x = collated_batch[0].to(device).float()
batches = list()
num_batches = math.ceil(len(x) / batch_size)
for i in range(num_batches):
start = i * batch_size
end = (i + 1) * batch_size
if end > len(x):
end = len(x)
batch_slice = x[start:end]
batches.append(batch_slice)
preds = list()
with torch.no_grad():
for batch in batches:
batch = batch.to(device).float()
pred = model(batch, *args, **kwargs)
preds.append(pred.cpu().numpy())
return np.concatenate(preds)
def simple_get_y(collated_batch: tuple[torch.Tensor, torch.Tensor], ) -> torch.Tensor:
"""
Get y from collated batch
Args:
collated_batch: collated batch to get y from
Returns:
torch.Tensor: y
"""
return collated_batch[1]